Literature DB >> 8024785

Effect of concentration of MgCl2 on random-amplified DNA polymorphism.

Y H Park1, R J Kohel.   

Abstract

The influence of MgCl2 concentration on products in PCR to generate random-amplified polymorphic DNA (RAPD) was evaluated between two highly polymorphic cotton lines. Varying the concentration of MgCl2 (1.5 to 6.0 mM) in the PCR mixtures resulted in both quantitative differences in RAPD PCR-derived DNA bands and qualitative changes in the DNA band patterns. The optimum concentration of MgCl2 was within the range of 1.5 to 4.5 mM in the PCR mixtures for 154 of 200 random primers tested. The optimum concentration of MgCl2 for each primer was independent of the GC/AT ratio of the primer and the number of DNA band(s) amplified.

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Year:  1994        PMID: 8024785

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  5 in total

1.  Restriction primers as short as 6-mers for PCR amplification of bacterial and plant genomic DNA and plant viral RNA.

Authors:  K H Ryu; S H Choi; J S Lee
Journal:  Mol Biotechnol       Date:  2000-01       Impact factor: 2.695

2.  Factors affecting reliability and reproducibility of amplification-based DNA fingerprinting of representative bacterial pathogens.

Authors:  K D Tyler; G Wang; S D Tyler; W M Johnson
Journal:  J Clin Microbiol       Date:  1997-02       Impact factor: 5.948

3.  Choice of methodology for assessing genetic impacts of environmental stressors: polymorphism and reproducibility of RAPD and AFLP fingerprints.

Authors:  M J Bagley; S L Anderson; B May
Journal:  Ecotoxicology       Date:  2001-08       Impact factor: 2.823

4.  Randomly amplified polymorphic DNA genotyping of serogroup A meningococci yields results similar to those obtained by multilocus enzyme electrophoresis and reveals new genotypes.

Authors:  A Bart; I G Schuurman; M Achtman; D A Caugant; J Dankert; A van der Ende
Journal:  J Clin Microbiol       Date:  1998-06       Impact factor: 5.948

5.  Development of high-resolution melting curve analysis in rapid detection of vanA gene, Enterococcus faecalis, and Enterococcus faecium from clinical isolates.

Authors:  Sanaz Dehbashi; Hamed Tahmasebi; Parinaz Sedighi; Faeze Davarian; Mohammad Reza Arabestani
Journal:  Trop Med Health       Date:  2020-02-18
  5 in total

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