Literature DB >> 8019591

Analysis of clones carrying repeated DNA sequences in two YAC libraries of Arabidopsis thaliana DNA.

R Schmidt1, J Putterill, J West, G Cnops, F Robson, G Coupland, C Dean.   

Abstract

YAC clones carrying repeated DNA sequences from the Arabidopsis thaliana genome have been characterized in two widely used Arabidopsis YAC libraries, the EG library and the EW library. Ribosomal, chloroplast and the paracentromeric repeat sequences are differentially represented in the two libraries. The coordinates of YAC clones hybridizing to these sequences are given. A high proportion of EG YAC clones were classified as containing chimaeric inserts because individual clones carried unique sequences and repetitive sequences originating from different locations in the genome. None of the EW YAC clones analysed were chimaeric in this way. YAC clones carrying tandemly repeated sequences, such as the paracentromeric or rDNA sequences, exhibited a high degree of instability. These observations need to be taken into account when using these libraries in the development of a physical map of the Arabidopsis genome and in chromosome walking experiments.

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Year:  1994        PMID: 8019591     DOI: 10.1111/j.1365-313x.1994.00735.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  6 in total

1.  Structural analysis and physical mapping of a pericentromeric region of chromosome 5 of Arabidopsis thaliana.

Authors:  S Tutois; C Cloix; C Cuvillier; M C Espagnol; J Lafleuriel; G Picard; S Tourmente
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

2.  Construction and characterization of a soybean yeast artificial chromosome library and identification of clones for the Rps6 region.

Authors:  Dipak K Santra; Devinder Sandhu; Thomas Tai; Madan K Bhattacharyya
Journal:  Funct Integr Genomics       Date:  2003-10-01       Impact factor: 3.410

3.  Analysis of the occurrence and nature of repeated DNA in an 850 kb region of Arabidopsis thaliana chromosome 4.

Authors:  H L Thompson; R Schmidt; C Dean
Journal:  Plant Mol Biol       Date:  1996-11       Impact factor: 4.076

4.  Genetic similarity among Arabidopsis thaliana ecotypes estimated by DNA sequence comparison.

Authors:  C S Hardtke; J Müller; T Berleth
Journal:  Plant Mol Biol       Date:  1996-12       Impact factor: 4.076

5.  Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants.

Authors:  A Barakat; G Matassi; G Bernardi
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

6.  Arabidopsis phosphoribosylanthranilate isomerase: molecular genetic analysis of triplicate tryptophan pathway genes.

Authors:  J Li; J Zhao; A B Rose; R Schmidt; R L Last
Journal:  Plant Cell       Date:  1995-04       Impact factor: 11.277

  6 in total

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