Literature DB >> 8015434

Evolution and phylogenetic information content of the ITS-1 region in the tiger beetle Cicindela dorsalis.

A P Vogler1, R DeSalle.   

Abstract

Sequence divergence in the internal transcribed spacer region 1 (ITS-1) of the ribosomal DNA locus was assessed in subspecies of the coastal North American tiger beetle, Cicindela dorsalis. The spacer region was amplified using the polymerase chain reaction and cloned for sequencing. Of a total of 50 clones obtained from 12 specimens, 42 clones were different in at least one nucleotide position. In a parsimony analysis of these sequences, the main phylogenetic distinction was found to separate sequences from the Gulf of Mexico and the Atlantic Ocean. Within these two assemblages phylogenetic resolution was low, and the variation within individuals was almost as high as the variation within the entire lineage. The pattern of sequence variation suggests the existence of two forms of the ITS-1 that are maintained on different chromosomes. Polymorphisms of limited geographical distribution could be detected, and 41 additional clones were partly sequenced, to assess the geographic distribution of these polymorphisms in more detail. In a population aggregation analysis, the geographic pattern of ITS-1 distribution was basically congruent with that obtained in earlier studies from mitochondrial DNA in the same C. dorsalis populations.

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Year:  1994        PMID: 8015434     DOI: 10.1093/oxfordjournals.molbev.a040121

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  24 in total

1.  Gall mite molecular phylogeny and its relationship to the evolution of plant host specificity.

Authors:  B Fenton; A N Birch; G Malloch; P G Lanham; R M Brennan
Journal:  Exp Appl Acarol       Date:  2000       Impact factor: 2.132

2.  Nuclear ribosomal DNA monophyly versus mitochondrial DNA polyphyly in two closely related mite species: the influence of life history and molecular drive.

Authors:  M Navajas; P Boursot
Journal:  Proc Biol Sci       Date:  2003-08-07       Impact factor: 5.349

3.  Variability of ribosomal DNA ITS-2 and its utility in detecting genetic relatedness of pearl oyster.

Authors:  Maoxian He; Liangmin Huang; Jianhua Shi; Yinping Jiang
Journal:  Mar Biotechnol (NY)       Date:  2005-03-11       Impact factor: 3.619

4.  ITS1 sequence variabilities correlate with 18S rDNA sequence types in the genus Acanthamoeba (Protozoa: Amoebozoa).

Authors:  Martina Köhsler; Brigitte Leitner; Marion Blaschitz; Rolf Michel; Horst Aspöck; Julia Walochnik
Journal:  Parasitol Res       Date:  2005-11-01       Impact factor: 2.289

5.  Genetic isolation through time: allochronic differentiation of a phenologically atypical population of the pine processionary moth.

Authors:  Helena Santos; Jérôme Rousselet; Emmanuelle Magnoux; Maria-Rosa Paiva; Manuela Branco; Carole Kerdelhué
Journal:  Proc Biol Sci       Date:  2007-04-07       Impact factor: 5.349

6.  Molecular Analysis of the Lance Nematode, Hoplolaimus spp., Using the First Internal Transcribed Spacer and the D1-D3 Expansion Segments of 28S Ribosomal DNA1.

Authors:  Ch Bae; Al Szalanski; Rt Robbins
Journal:  J Nematol       Date:  2008-09       Impact factor: 1.402

7.  Conservation patterns in angiosperm rDNA ITS2 sequences.

Authors:  M A Hershkovitz; E A Zimmer
Journal:  Nucleic Acids Res       Date:  1996-08-01       Impact factor: 16.971

8.  Intragenomic variations of multicopy ITS2 marker in Agrodiaetus blue butterflies (Lepidoptera, Lycaenidae).

Authors:  Nazar A Shapoval; Vladimir A Lukhtanov
Journal:  Comp Cytogenet       Date:  2015-08-07       Impact factor: 1.800

9.  Genetic variation of Hoplolaimus columbus populations in the United States using PCR-RFLP analysis of nuclear rDNA ITS regions.

Authors:  C H Bae; A L Szalanski; R T Robbins
Journal:  J Nematol       Date:  2009-09       Impact factor: 1.402

10.  Repetitive sequences in the ITS1 region of the ribosomal DNA of Tunga penetrans and other flea species (Insecta, Siphonaptera).

Authors:  Sara Gamerschlag; Heinz Mehlhorn; Jörg Heukelbach; Hermann Feldmeier; Jochen D'Haese
Journal:  Parasitol Res       Date:  2007-10-19       Impact factor: 2.289

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