Literature DB >> 7988562

Modulation of tyrT promoter activity by template supercoiling in vivo.

R P Bowater1, D Chen, D M Lilley.   

Abstract

We have found that initiation of RNA synthesis at the tyrT promoter of Escherichia coli can be stimulated on a plasmid by a factor of 4-6 by elevation of DNA supercoiling in vivo. Increased unconstrained plasmid supercoiling was achieved by inserting the tyrT promoter upstream of the tetracycline resistance gene tetA and transformation into a topA host. Under these conditions there is marked oversupercoiling of the plasmid DNA and we have shown previously that this can lead to increased promoter activity in the topological domain created. A critical element in the formation of this domain is the coupled transcription, translation and membrane insertion of tetA and we show that all of these events are important in the stimulation of tyrT promoter activity. The magnitude of the stimulation is in reasonable agreement with that measured in vitro as a function of plasmid supercoiling, if the unconstrained level of negative supercoiling in vivo is increased from a basal level of -sigma approximately 0.022 to -sigma approximately -0.052 by transcription-induced supercoiling. The induced supercoiling is very efficient, indicating that the tyrT promoter is itself contributing to the steady-state level despite a total lack of membrane anchorage for the tyrT transcription unit. This study provides a new example of the topological coupling of promoters.

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Year:  1994        PMID: 7988562      PMCID: PMC395530          DOI: 10.1002/j.1460-2075.1994.tb06903.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  60 in total

1.  Direct evidence for the effect of transcription on local DNA supercoiling in vivo.

Authors:  A R Rahmouni; R D Wells
Journal:  J Mol Biol       Date:  1992-01-05       Impact factor: 5.469

2.  Suppression of promoter mutations by the pleiotropic supx mutations.

Authors:  E Dubnau; P Margolin
Journal:  Mol Gen Genet       Date:  1972

3.  Alteration of the growth-rate-dependent regulation of Escherichia coli tyrT expression by promoter mutations.

Authors:  A A Travers; A I Lamond; J R Weeks
Journal:  J Mol Biol       Date:  1986-05-05       Impact factor: 5.469

4.  Bacterial chromatin. A new twist to an old story.

Authors:  D Lilley
Journal:  Nature       Date:  1986 Mar 6-12       Impact factor: 49.962

5.  Effect of superhelicity on the transcription from the tet promoter of pBR322. Abortive initiation and unwinding experiments.

Authors:  E Bertrand-Burggraf; M Schnarr; J F Lefevre; M Daune
Journal:  Nucleic Acids Res       Date:  1984-10-25       Impact factor: 16.971

6.  Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling.

Authors:  R Menzel; M Gellert
Journal:  Cell       Date:  1983-08       Impact factor: 41.582

7.  Regulation of the Escherichia coli DNA topoisomerase I gene by DNA supercoiling.

Authors:  Y C Tse-Dinh
Journal:  Nucleic Acids Res       Date:  1985-07-11       Impact factor: 16.971

8.  Positively supercoiled plasmid DNA is produced by treatment of Escherichia coli with DNA gyrase inhibitors.

Authors:  D Lockshon; D R Morris
Journal:  Nucleic Acids Res       Date:  1983-05-25       Impact factor: 16.971

9.  Mutations in the gene coding for Escherichia coli DNA topoisomerase I affect transcription and transposition.

Authors:  R Sternglanz; S DiNardo; K A Voelkel; Y Nishimura; Y Hirota; K Becherer; L Zumstein; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1981-05       Impact factor: 11.205

10.  Supercoiling response of a bacterial tRNA gene.

Authors:  A I Lamond
Journal:  EMBO J       Date:  1985-02       Impact factor: 11.598

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  12 in total

1.  Promoter protection by a transcription factor acting as a local topological homeostat.

Authors:  Mark Rochman; Michal Aviv; Gad Glaser; Georgi Muskhelishvili
Journal:  EMBO Rep       Date:  2002-03-15       Impact factor: 8.807

2.  DNA supercoiling-dependent gene regulation in Chlamydia.

Authors:  Eike Niehus; Eric Cheng; Ming Tan
Journal:  J Bacteriol       Date:  2008-07-25       Impact factor: 3.490

Review 3.  Integration of syntactic and semantic properties of the DNA code reveals chromosomes as thermodynamic machines converting energy into information.

Authors:  Georgi Muskhelishvili; Andrew Travers
Journal:  Cell Mol Life Sci       Date:  2013-06-15       Impact factor: 9.261

4.  Hyper-negative template DNA supercoiling during transcription of the tetracycline-resistance gene in topA mutants is largely constrained in vivo.

Authors:  A C Albert; F Spirito; N Figueroa-Bossi; L Bossi; A R Rahmouni
Journal:  Nucleic Acids Res       Date:  1996-08-01       Impact factor: 16.971

5.  The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control.

Authors:  N Figueroa-Bossi; M Guérin; R Rahmouni; M Leng; L Bossi
Journal:  EMBO J       Date:  1998-04-15       Impact factor: 11.598

6.  FIS activates sequential steps during transcription initiation at a stable RNA promoter.

Authors:  G Muskhelishvili; M Buckle; H Heumann; R Kahmann; A A Travers
Journal:  EMBO J       Date:  1997-06-16       Impact factor: 11.598

7.  How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation.

Authors:  Eric J Rawdon; Julien Dorier; Dusan Racko; Kenneth C Millett; Andrzej Stasiak
Journal:  Nucleic Acids Res       Date:  2016-04-22       Impact factor: 16.971

8.  Dual function of the copR gene product of plasmid pIP501.

Authors:  S Brantl; E G Wagner
Journal:  J Bacteriol       Date:  1997-11       Impact factor: 3.490

9.  Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro.

Authors:  Z Wang; P Dröge
Journal:  EMBO J       Date:  1996-02-01       Impact factor: 11.598

10.  Endogenous fluctuations of DNA topology in the chloroplast of Chlamydomonas reinhardtii.

Authors:  M L Salvador; U Klein; L Bogorad
Journal:  Mol Cell Biol       Date:  1998-12       Impact factor: 4.272

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