Literature DB >> 7966341

Site-directed mutagenesis and 1H nuclear magnetic resonance of an anti-dinitrophenyl spin label antibody.

M Martinez-Yamout1, H M McConnell.   

Abstract

Mutagenesis and spin label difference spectroscopy are used to assign the resonances of tyrosine residues in the binding site of the anti-dinitrophenyl spin label (DNP-SL) antibody AN02. Hapten binding constants of 13 point mutants are determined. From these studies it is clear that a light chain tyrosine specifically stabilizes DNP-SL binding, perhaps by means of a hydrogen bond to the hapten. This bond is absent in the case of the diamagnetic hapten dinitrophenyl-diglycine (DNP-Gly2). AN02 mutants with approximately 50 and 200-fold enhanced affinities for DNP-Gly2 are engineered. In these mutants, a single amino acid change relieves an electrostatic interaction between DNP-Gly2 and the binding site. The resulting improvement in hapten binding ability is specific to DNP-Gly2, since the affinity for DNP-SL is relatively unchanged. Evidence of conformational heterogeneity in the AN02/DNP-Gly2 complex is presented. In contrast with DNP-Gly, a ring proton of DNP-Gly2 experiences two environments on binding to AN02. It was previously shown that a light chain tyrosine (LY31) also assumes two conformations when DNP-Gly2 is bound. The simultaneous presence of multiple AN02/DNP-Gly2 complexes implies conformational isomerism of a tryptophan residue which contacts both the hapten and LY31.

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Year:  1994        PMID: 7966341     DOI: 10.1006/jmbi.1994.1731

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  4 in total

1.  DNA binding mode of the Fab fragment of a monoclonal antibody specific for cyclobutane pyrimidine dimer.

Authors:  T Torizawa; N Yamamoto; T Suzuki; K Nobuoka; Y Komatsu; H Morioka; O Nikaido; E Ohtsuka; K Kato; I Shimada
Journal:  Nucleic Acids Res       Date:  2000-02-15       Impact factor: 16.971

2.  Changes in structure and dynamics of the Fv fragment of a catalytic antibody upon binding of inhibitor.

Authors:  Gerard J A Kroon; Huaping Mo; Maria A Martinez-Yamout; H Jane Dyson; Peter E Wright
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

Review 3.  Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides.

Authors:  Koichi Kato; Takumi Yamaguchi
Journal:  Glycoconj J       Date:  2015-06-07       Impact factor: 2.916

4.  Molecular dynamics force probe simulations of antibody/antigen unbinding: entropic control and nonadditivity of unbinding forces.

Authors:  B Heymann; H Grubmüller
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

  4 in total

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