Literature DB >> 7958969

The complete mitochondrial DNA sequence of the horse, Equus caballus: extensive heteroplasmy of the control region.

X Xu1, U Arnason.   

Abstract

The sequence of the mitochondrial (mt) DNA of the horse (Equus caballus) was determined. The length of the sequence presented is 16,660 bp. This figure, however, is not absolute due to pronounced heteroplasmy caused by variable numbers of the motif GTGCACCT in the control region of different molecules. Boundaries of the 13 peptide-coding genes were determined by the presence of start and stop codons, and by analogy with other eutherian mtDNAs. Three genes (COIII, NADH3 and NADH4) were not terminated by a stop codon. Comparison among the peptide-coding genes of the horse and eight other mammals suggests that the boundaries of some mt genes should be redefined. The number of repeats in the control region was determined by sequencing 77 different clones (20 direct plus 57 PCR clones). The number of repeats ranged from 2 to 29. There was a pronounced overrepresentation of clones with many repeats (22-27). Very few clones had a repeat number that was close to the mean number of repeats.

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Year:  1994        PMID: 7958969     DOI: 10.1016/0378-1119(94)90713-7

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  65 in total

1.  Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication.

Authors:  Alessandro Achilli; Anna Olivieri; Pedro Soares; Hovirag Lancioni; Baharak Hooshiar Kashani; Ugo A Perego; Solomon G Nergadze; Valeria Carossa; Marco Santagostino; Stefano Capomaccio; Michela Felicetti; Walid Al-Achkar; M Cecilia T Penedo; Andrea Verini-Supplizi; Massoud Houshmand; Scott R Woodward; Ornella Semino; Maurizio Silvestrelli; Elena Giulotto; Luísa Pereira; Hans-Jürgen Bandelt; Antonio Torroni
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  Model of amino acid substitution in proteins encoded by mitochondrial DNA.

Authors:  J Adachi; M Hasegawa
Journal:  J Mol Evol       Date:  1996-04       Impact factor: 2.395

3.  The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria.

Authors:  A Janke; X Xu; U Arnason
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-18       Impact factor: 11.205

4.  Phylogenetic analyses of complete cytochrome b genes of the order carnivora with particular emphasis on the caniformia.

Authors:  C Ledje; U Arnason
Journal:  J Mol Evol       Date:  1996-02       Impact factor: 2.395

5.  Evolution of repeated sequence arrays in the D-loop region of bat mitochondrial DNA.

Authors:  G S Wilkinson; F Mayer; G Kerth; B Petri
Journal:  Genetics       Date:  1997-07       Impact factor: 4.562

6.  Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene.

Authors:  C Ledje; U Arnason
Journal:  J Mol Evol       Date:  1996-12       Impact factor: 2.395

7.  The complete mitochondrial DNA sequence of the guanaco (Lama guanicoe): comparative analysis with the vicuña (Vicugna vicugna) genome.

Authors:  Florencia Di Rocco; Andrés Zambelli; Laura Maté; Lidia Vidal-Rioja
Journal:  Genetica       Date:  2010-06-04       Impact factor: 1.082

8.  Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes.

Authors:  Luca Pozzi; Jason A Hodgson; Andrew S Burrell; Kirstin N Sterner; Ryan L Raaum; Todd R Disotell
Journal:  Mol Phylogenet Evol       Date:  2014-02-28       Impact factor: 4.286

9.  Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade.

Authors:  B M Ursing; U Arnason
Journal:  Proc Biol Sci       Date:  1998-12-07       Impact factor: 5.349

10.  Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system.

Authors:  Chie Takemoto; Linda L Spremulli; Lisa A Benkowski; Takuya Ueda; Takashi Yokogawa; Kimitsuna Watanabe
Journal:  Nucleic Acids Res       Date:  2009-01-16       Impact factor: 16.971

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