Literature DB >> 7954830

Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.

K Ogata1, S Morikawa, H Nakamura, A Sekikawa, T Inoue, H Kanai, A Sarai, S Ishii, Y Nishimura.   

Abstract

The DNA-binding region of Myb consists of three imperfect tandem repeats (R1, R2, and R3). We have determined the solution structure of a specific DNA complex of the minimum DNA-binding domain (R2R3) by heteronuclear multidimensional NMR. Both R2 and R3 contain three helices, and the third helix in each is found to be a recognition helix. R2 and R3 are closely packed in the major groove, so that the two recognition helices contact each other directly to bind to the specific base sequence, AACNG cooperatively; this is a significant arrangement of recognition helices. The three key base pairs in this sequence are specifically recognized by Asn-183 (R3), Lys-182 (R3), and Lys-128 (R2). In contrast, R1 has no specific interactions with DNA from our NMR study of the DNA complex of the full DNA-binding domain (R1R2R3).

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Year:  1994        PMID: 7954830     DOI: 10.1016/0092-8674(94)90549-5

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  173 in total

1.  Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements.

Authors:  J Yang; H S Malik; T H Eickbush
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

2.  Identification of the residues in the Myb domain of maize C1 that specify the interaction with the bHLH cofactor R.

Authors:  E Grotewold; M B Sainz; L Tagliani; J M Hernandez; B Bowen; V L Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

3.  Characterization of two Myb-like transcription factors binding to CAB promoters in wheat and barley.

Authors:  Yuri Churin; Eva Adam; Laszlo Kozma-Bognar; Ferenc Nagy; Thomas Börner
Journal:  Plant Mol Biol       Date:  2003-05       Impact factor: 4.076

4.  Excess non-synonymous substitutions suggest that positive selection episodes occurred during the evolution of DNA-binding domains in the Arabidopsis R2R3-MYB gene family.

Authors:  Li Jia; Michael T Clegg; Tao Jiang
Journal:  Plant Mol Biol       Date:  2003-06       Impact factor: 4.076

5.  Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators.

Authors:  Kazuo Hosoda; Aya Imamura; Etsuko Katoh; Tomohisa Hatta; Mari Tachiki; Hisami Yamada; Takeshi Mizuno; Toshimasa Yamazaki
Journal:  Plant Cell       Date:  2002-09       Impact factor: 11.277

6.  Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression.

Authors:  Chung-An Lu; Tuan-hua David Ho; Shin-Lon Ho; Su-May Yu
Journal:  Plant Cell       Date:  2002-08       Impact factor: 11.277

7.  A highly organized structure mediating nuclear localization of a Myb2 transcription factor in the protozoan parasite Trichomonas vaginalis.

Authors:  Chien-Hsin Chu; Lung-Chun Chang; Hong-Ming Hsu; Shu-Yi Wei; Hsing-Wei Liu; Yu Lee; Chung-Chi Kuo; Dharmu Indra; Chinpan Chen; Shiou-Jeng Ong; Jung-Hsiang Tai
Journal:  Eukaryot Cell       Date:  2011-10-21

8.  B-Myb promotes S-phase independently of its sequence-specific DNA binding activity and interacts with polymerase delta-interacting protein 1 (Pdip1).

Authors:  Eugen Werwein; Thore Schmedt; Heiko Hoffmann; Clemens Usadel; Nora Obermann; Jeffrey D Singer; Karl-Heinz Klempnauer
Journal:  Cell Cycle       Date:  2012-10-03       Impact factor: 4.534

9.  Architectural arrangement of the small nuclear RNA (snRNA)-activating protein complex 190 subunit (SNAP190) on U1 snRNA gene promoter DNA.

Authors:  Matthew T Doherty; Yoon Soon Kang; Cheryn Lee; William E Stumph
Journal:  J Biol Chem       Date:  2012-10-04       Impact factor: 5.157

10.  A novel yeast system for in vivo selection of recognition sequences: defining an optimal c-Myb-responsive element.

Authors:  T Berge; S L Bergholtz; K B Andersson; O S Gabrielsen
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

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