Literature DB >> 7937966

Native-like in vivo folding of a circularly permuted jellyroll protein shown by crystal structure analysis.

M Hahn1, K Piotukh, R Borriss, U Heinemann.   

Abstract

A jellyroll beta-sandwich protein, the Bacillus beta-glucanase H(A16-M), is used to probe the role of N-terminal peptide regions in protein folding in vivo. A gene encoding H(A16-M) is rearranged to place residues 1-58 of the protein behind a signal peptide and residues 59-214. The rearranged gene is expressed in Escherichia coli. The resultant circularly permuted protein, cpA16M-59, is secreted into the periplasm, correctly processed, and folded into a stable and active enzyme. Crystal structure analysis at 2.0-A resolution, R = 15.3%, shows cpA16M-59 to have a three-dimensional structure nearly identical with that of the parent beta-glucanase. An analogous experiment based on the wild-type Bacillus macerans beta-glucanase, giving rise to the circularly permuted variant cpMAC-57, yields the same results. Folding of these proteins, therefore, is not a vectorial process depending on the conformation adopted by their native N-terminal oligopeptides after ribosomal synthesis and translocation through the cytoplasmic membrane.

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Year:  1994        PMID: 7937966      PMCID: PMC45031          DOI: 10.1073/pnas.91.22.10417

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  DNA sequence of a Fibrobacter succinogenes mixed-linkage beta-glucanase (1,3-1,4-beta-D-glucan 4-glucanohydrolase) gene.

Authors:  R M Teather; J D Erfle
Journal:  J Bacteriol       Date:  1990-07       Impact factor: 3.490

2.  Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension.

Authors:  R M Horton; H D Hunt; S N Ho; J K Pullen; L R Pease
Journal:  Gene       Date:  1989-04-15       Impact factor: 3.688

3.  Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO.

Authors:  T A Jones
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

4.  Aspartate transcarbamoylase containing circularly permuted catalytic polypeptide chains.

Authors:  Y R Yang; H K Schachman
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

5.  Folding pathway mediated by an intramolecular chaperone.

Authors:  U Shinde; Y Li; S Chatterjee; M Inouye
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-01       Impact factor: 11.205

6.  Amino and carboxy-terminal regions in globular proteins.

Authors:  J M Thornton; B L Sibanda
Journal:  J Mol Biol       Date:  1983-06-25       Impact factor: 5.469

7.  Structure of the beta-1,3-1,4-glucanase gene of Bacillus macerans: homologies to other beta-glucanases.

Authors:  R Borriss; K Buettner; P Maentsaelae
Journal:  Mol Gen Genet       Date:  1990-07

8.  Cation binding to a Bacillus (1,3-1,4)-beta-glucanase. Geometry, affinity and effect on protein stability.

Authors:  T Keitel; M Meldgaard; U Heinemann
Journal:  Eur J Biochem       Date:  1994-05-15

9.  Molecular and active-site structure of a Bacillus 1,3-1,4-beta-glucanase.

Authors:  T Keitel; O Simon; R Borriss; U Heinemann
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-01       Impact factor: 11.205

10.  Circular and circularly permuted forms of bovine pancreatic trypsin inhibitor.

Authors:  D P Goldenberg; T E Creighton
Journal:  J Mol Biol       Date:  1983-04-05       Impact factor: 5.469

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  15 in total

1.  Circular permutation of 5-aminolevulinate synthase. Mapping the polypeptide chain to its function.

Authors:  A V Cheltsov; M J Barber; G C Ferreira
Journal:  J Biol Chem       Date:  2001-03-15       Impact factor: 5.157

2.  Random circular permutation leading to chain disruption within and near alpha helices in the catalytic chains of aspartate transcarbamoylase: effects on assembly, stability, and function.

Authors:  P T Beernink; Y R Yang; R Graf; D S King; S S Shah; H K Schachman
Journal:  Protein Sci       Date:  2001-03       Impact factor: 6.725

3.  In vivo assembly of aspartate transcarbamoylase from fragmented and circularly permuted catalytic polypeptide chains.

Authors:  X Ni; H K Schachman
Journal:  Protein Sci       Date:  2001-03       Impact factor: 6.725

4.  Circular permutation as a tool to reduce surface entropy triggers crystallization of the signal recognition particle receptor beta subunit.

Authors:  Thomas U Schwartz; Rudolf Walczak; Günter Blobel
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

5.  Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment.

Authors:  W Gong; M O'Gara; R M Blumenthal; X Cheng
Journal:  Nucleic Acids Res       Date:  1997-07-15       Impact factor: 16.971

6.  Random circular permutation of genes and expressed polypeptide chains: application of the method to the catalytic chains of aspartate transcarbamoylase.

Authors:  R Graf; H K Schachman
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

7.  Refolding the unfoldable: A systematic approach for renaturation of Bacillus circulans xylanase.

Authors:  Miriam P Kötzler; Lawrence P McIntosh; Stephen G Withers
Journal:  Protein Sci       Date:  2017-05-11       Impact factor: 6.725

8.  In vivo formation of allosteric aspartate transcarbamoylase containing circularly permuted catalytic polypeptide chains: implications for protein folding and assembly.

Authors:  P Zhang; H K Schachman
Journal:  Protein Sci       Date:  1996-07       Impact factor: 6.725

9.  The Structure of a Thermophilic Kinase Shapes Fitness upon Random Circular Permutation.

Authors:  Alicia M Jones; Manan M Mehta; Emily E Thomas; Joshua T Atkinson; Thomas H Segall-Shapiro; Shirley Liu; Jonathan J Silberg
Journal:  ACS Synth Biol       Date:  2016-03-25       Impact factor: 5.110

10.  Structure of the PduU shell protein from the Pdu microcompartment of Salmonella.

Authors:  Christopher S Crowley; Michael R Sawaya; Thomas A Bobik; Todd O Yeates
Journal:  Structure       Date:  2008-09-10       Impact factor: 5.006

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