Literature DB >> 7922684

MULTICOMP: a program for preparing sequence data for phylogenetic analysis.

P R Reeves1, L Farnell, R Lan.   

Abstract

MULTICOMP is a program that assists in the phylogenetic analysis of DNA sequences. It streamlines sequence handling and analysis. Input is from either individual sequence files or a file of aligned sequences. It produces data on variation at DNA and amino acid sequence level and can also convert sequences to data formats suitable for PHYLIP, PAUP and MacClade phylogenetic inference programs. Further, two tree-building programs, NEIGHBOR and DNAPARS, of PHYLIP can be directly run from within it. MULTICOMP performs Sawyer's algorithm for detection of gene conversion. The program facilitates analysis using only part of the data of a data set or using two or more combined data sets.

Mesh:

Year:  1994        PMID: 7922684     DOI: 10.1093/bioinformatics/10.3.281

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  22 in total

1.  Molecular characterization of Streptococcus pneumoniae type 4, 6B, 8, and 18C capsular polysaccharide gene clusters.

Authors:  S M Jiang; L Wang; P R Reeves
Journal:  Infect Immun       Date:  2001-03       Impact factor: 3.441

2.  Population structure and evolution of pathogenicity of Yersinia pseudotuberculosis.

Authors:  Shear Lane Ch'ng; Sophie Octavia; Qiuyu Xia; An Duong; Mark M Tanaka; Hiroshi Fukushima; Ruiting Lan
Journal:  Appl Environ Microbiol       Date:  2010-12-03       Impact factor: 4.792

3.  Adaptation of multilocus sequencing for studying variation within a major clone: evolutionary relationships of Salmonella enterica serovar Typhimurium.

Authors:  Honghua Hu; Ruiting Lan; Peter R Reeves
Journal:  Genetics       Date:  2005-10-03       Impact factor: 4.562

4.  Comparison of O-antigen gene clusters of Escherichia coli (Shigella) sonnei and Plesiomonas shigelloides O17: sonnei gained its current plasmid-borne O-antigen genes from P. shigelloides in a recent event.

Authors:  J G Shepherd; L Wang; P R Reeves
Journal:  Infect Immun       Date:  2000-10       Impact factor: 3.441

5.  A comparison of the nucleotide sequences of the adk and recA genes of pathogenic and commensal Neisseria species: evidence for extensive interspecies recombination within adk.

Authors:  E Feil; J Zhou; J Maynard Smith; B G Spratt
Journal:  J Mol Evol       Date:  1996-12       Impact factor: 2.395

6.  The internal transcribed spacer region, a new tool for use in species differentiation and delineation of systematic relationships within the Campylobacter genus.

Authors:  Si Ming Man; Nadeem O Kaakoush; Sophie Octavia; Hazel Mitchell
Journal:  Appl Environ Microbiol       Date:  2010-03-26       Impact factor: 4.792

7.  Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies.

Authors:  G M Pupo; D K Karaolis; R Lan; P R Reeves
Journal:  Infect Immun       Date:  1997-07       Impact factor: 3.441

8.  Molecular basis of the indole-negative reaction in Shigella strains: extensive damages to the tna operon by insertion sequences.

Authors:  Ferdousi Rezwan; Ruiting Lan; Peter R Reeves
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

9.  Molecular evolutionary relationships of enteroinvasive Escherichia coli and Shigella spp.

Authors:  Ruiting Lan; M Chehani Alles; Kathy Donohoe; Marina B Martinez; Peter R Reeves
Journal:  Infect Immun       Date:  2004-09       Impact factor: 3.441

10.  Population structure of Helicobacter pylori among ethnic groups in Malaysia: recent acquisition of the bacterium by the Malay population.

Authors:  Chin Yen Tay; Hazel Mitchell; Quanjiang Dong; Khean-Lee Goh; Ian W Dawes; Ruiting Lan
Journal:  BMC Microbiol       Date:  2009-06-19       Impact factor: 3.605

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