Literature DB >> 7921670

Overcoming solvent saturation-transfer artifacts in protein NMR at neutral pH. Application of pulsed field gradients in measurements of 1H-15N Overhauser effects.

Y C Li1, G T Montelione.   

Abstract

Artifacts due to solvent saturation-transfer effects result in incorrect measurements of 1H-15N heteronuclear NOE (HNOE). These artifacts are commonly observed in aqueous protein solutions at neutral pH. We describe the application of pulsed field gradients (PFGs) together with long recycle delays in overcoming errors in HNOE measurements which arise from H2O solvent preirradiation and solvent saturation transfer. Even in the absence of explicit solvent irradiation, the HNOE pulse sequence itself results in a nonequilibrium spin-state distribution of solvent nuclei which can then be transferred by chemical exchange into amide-proton sites. This effect can be avoided by using PFGs for suppression of solvent H2O together with a recycle delay sufficiently long for the magnetization of water to relax back to equilibrium values during the preparation period. These effects were studied in 15N-enriched human type alpha transforming growth factor at pH 7.1. Comparisons of PFG-HNOE experiments with and without selective H2O irradiation and with different recycle times provide estimates of the effects of solvent irradiation on HNOE measurements, which are different for different amide nitrogen-15 nuclei. The amplitudes of these artificial HNOE enhancements are roughly correlated with solvent accessibilities of amide sites in the three-dimensional structure of hTGF alpha.

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Year:  1994        PMID: 7921670     DOI: 10.1006/jmrb.1994.1098

Source DB:  PubMed          Journal:  J Magn Reson B        ISSN: 1064-1866


  9 in total

1.  15N-{1H} NOE experiment at high magnetic field strengths.

Authors:  Qingguo Gong; Rieko Ishima
Journal:  J Biomol NMR       Date:  2007-01-16       Impact factor: 2.835

2.  Model-free analysis for large proteins at high magnetic field strengths.

Authors:  Shou-Lin Chang; Andrew P Hinck; Rieko Ishima
Journal:  J Biomol NMR       Date:  2007-06-26       Impact factor: 2.835

3.  A study on the influence of fast amide exchange on the accuracy of (15)N relaxation rate constants.

Authors:  Simon Jurt; Oliver Zerbe
Journal:  J Biomol NMR       Date:  2012-11-10       Impact factor: 2.835

Review 4.  NMR Methods for Characterizing the Basic Side Chains of Proteins: Electrostatic Interactions, Hydrogen Bonds, and Conformational Dynamics.

Authors:  Dan Nguyen; Chuanying Chen; B Montgomery Pettitt; Junji Iwahara
Journal:  Methods Enzymol       Date:  2018-09-27       Impact factor: 1.600

5.  Combined use of 13C chemical shift and 1H alpha-13C alpha heteronuclear NOE data in monitoring a protein NMR structure refinement.

Authors:  B Celda; C Biamonti; M J Arnau; R Tejero; G T Montelione
Journal:  J Biomol NMR       Date:  1995-02       Impact factor: 2.835

6.  Structure and tropomyosin binding properties of the N-terminal capping domain of tropomodulin 1.

Authors:  Norma J Greenfield; Alla S Kostyukova; Sarah E Hitchcock-DeGregori
Journal:  Biophys J       Date:  2004-10-08       Impact factor: 4.033

7.  Secondary structure determination by NMR spectroscopy of an immunoglobulin-like domain from the giant muscle protein titin.

Authors:  M Pfuhl; M Gautel; A S Politou; C Joseph; A Pastore
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

8.  Practical aspects of the 2D 15N-[1h]-NOE experiment.

Authors:  Christian Renner; Michael Schleicher; Luis Moroder; Tad A Holak
Journal:  J Biomol NMR       Date:  2002-05       Impact factor: 2.835

9.  Mechanism of activation for transcription factor PhoB suggested by different modes of dimerization in the inactive and active states.

Authors:  Priti Bachhawat; G V T Swapna; Gaetano T Montelione; Ann M Stock
Journal:  Structure       Date:  2005-09       Impact factor: 5.006

  9 in total

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