Literature DB >> 7907422

Molecular and population genetic analysis of allelic sequence diversity at the human beta-globin locus.

S M Fullerton1, R M Harding, A J Boyce, J B Clegg.   

Abstract

Allelic sequence polymorphism at the beta-globin locus was investigated in a group of 36 Melanesians. A 3-kilobase fragment containing the gene and its flanking regions was sequenced in 60 normal (beta A) and 12 thalassemic (intron 1, position 5, G-->C) chromosomes. Haplotype relationships between linked polymorphisms were derived by allele-specific PCR amplification and sequencing. Seventeen nucleotide polymorphisms and 2 length variants were identified, and these sites segregated as 17 sequence haplotypes in the normal chromosomes. This haplotype diversity is higher than that expected on the basis of the nucleotide polymorphism observed and is probably due to recombination and gene conversion. Nucleotide diversity at synonymous sites in the sample is 0.14%, suggesting an average age of sequence divergence of approximately 450,000 years, consistent with that expected for a neutrally evolving human nuclear locus.

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Year:  1994        PMID: 7907422      PMCID: PMC43252          DOI: 10.1073/pnas.91.5.1805

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

5.  Polymerase chain reaction amplification applied to the determination of beta-like globin gene cluster haplotypes.

Authors:  M Sutton; E E Bouhassira; R L Nagel
Journal:  Am J Hematol       Date:  1989-09       Impact factor: 10.047

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Authors:  G Kohen; N Philippe; J Godet
Journal:  Hum Genet       Date:  1982       Impact factor: 4.132

7.  Mitochondrial DNA and human evolution.

Authors:  R L Cann; M Stoneking; A C Wilson
Journal:  Nature       Date:  1987 Jan 1-7       Impact factor: 49.962

Review 8.  Why are some genetic diseases common? Distinguishing selection from other processes by molecular analysis of globin gene variants.

Authors:  J Flint; R M Harding; J B Clegg; A J Boyce
Journal:  Hum Genet       Date:  1993-03       Impact factor: 4.132

9.  The DNA sequence of the 5' flanking region of the human beta-globin gene: evolutionary conservation and polymorphic differences.

Authors:  N Moschonas; E de Boer; R A Flavell
Journal:  Nucleic Acids Res       Date:  1982-03-25       Impact factor: 16.971

10.  Low nucleotide diversity in man.

Authors:  W H Li; L A Sadler
Journal:  Genetics       Date:  1991-10       Impact factor: 4.562

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  29 in total

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2.  Molecular analysis of the beta-globin gene cluster in the Niokholo Mandenka population reveals a recent origin of the beta(S) Senegal mutation.

Authors:  Mathias Currat; Guy Trabuchet; David Rees; Pascale Perrin; Rosalind M Harding; John B Clegg; André Langaney; Laurent Excoffier
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4.  Effects of inbreeding on the genetic diversity of populations.

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-06-29       Impact factor: 6.237

5.  Estimating the rate of gene conversion on human chromosome 21.

Authors:  Badri Padhukasahasram; Paul Marjoram; Magnus Nordborg
Journal:  Am J Hum Genet       Date:  2004-07-12       Impact factor: 11.025

6.  Inference on recombination and block structure using unphased data.

Authors:  Carsten Wiuf
Journal:  Genetics       Date:  2004-01       Impact factor: 4.562

7.  Topologies of the conditional ancestral trees and full-likelihood-based inference in the general coalescent tree framework.

Authors:  Ori Sargsyan
Journal:  Genetics       Date:  2010-05-17       Impact factor: 4.562

8.  Estimating recombination rates from single-nucleotide polymorphisms using summary statistics.

Authors:  Badri Padhukasahasram; Jeffrey D Wall; Paul Marjoram; Magnus Nordborg
Journal:  Genetics       Date:  2006-09-15       Impact factor: 4.562

9.  DNA variability and recombination rates at X-linked loci in humans.

Authors:  M W Nachman; V L Bauer; S L Crowell; C F Aquadro
Journal:  Genetics       Date:  1998-11       Impact factor: 4.562

10.  Genealogical inference from microsatellite data.

Authors:  I J Wilson; D J Balding
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

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