Literature DB >> 7875942

1H NMR analysis of fibril-forming peptide fragments of transthyretin.

J A Jarvis1, A Kirkpatrick, D J Craik.   

Abstract

Peptide fragments of the protein transthyretin, previously shown to form cross beta-sheet amyloid-like fibrils in vitro, were investigated using 1H 1D and 2D NMR techniques. TTR 10-20, TTR 105-115 as well as a substituted analogue, (TTR 105-115Met111) all formed amyloid-like fibrils readily in 20-30% acetonitrile/water at room temperature. It was found that the presence of fibrils in the peptide solutions did not affect the observable NMR spectra, which may have been due to the line-broadening that would be associated with these macromolecular species. 1H NMR spectra were thus representative of the monomeric form of the peptide in solution. Information from D2O exchange, 3JNH-alpha H coupling measurements, temperature coefficients and NOESY experiments suggested that these peptides have some propensity for turn or helix but were predominantly unstructured. There was no indication of the monomeric species existing predominantly in an extended form, suggesting that the formation of beta-sheet based fibrils does not require preformed extended structures. TTR 105-115Met111 displayed slight structural differences from TTR 105-115 which may be related to the fibril-forming propensity of the corresponding mutant TTR.

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Year:  1994        PMID: 7875942     DOI: 10.1111/j.1399-3011.1994.tb01024.x

Source DB:  PubMed          Journal:  Int J Pept Protein Res        ISSN: 0367-8377


  12 in total

1.  Transthyretin-derived peptides as β-amyloid inhibitors.

Authors:  Patricia Y Cho; Gururaj Joshi; Jeffrey A Johnson; Regina M Murphy
Journal:  ACS Chem Neurosci       Date:  2014-04-09       Impact factor: 4.418

2.  Molecular conformation of a peptide fragment of transthyretin in an amyloid fibril.

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-12       Impact factor: 11.205

3.  Multi-eGO: An in silico lens to look into protein aggregation kinetics at atomic resolution.

Authors:  Emanuele Scalone; Luca Broggini; Cristina Visentin; Davide Erba; Fran Bačić Toplek; Kaliroi Peqini; Sara Pellegrino; Stefano Ricagno; Cristina Paissoni; Carlo Camilloni
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-23       Impact factor: 12.779

4.  NMR-detected hydrogen exchange and molecular dynamics simulations provide structural insight into fibril formation of prion protein fragment 106-126.

Authors:  Kazuo Kuwata; Tomoharu Matumoto; Hong Cheng; Kuniaki Nagayama; Thomas L James; Heinrich Roder
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

5.  Localized structural fluctuations promote amyloidogenic conformations in transthyretin.

Authors:  Kwang Hun Lim; H Jane Dyson; Jeffery W Kelly; Peter E Wright
Journal:  J Mol Biol       Date:  2013-01-11       Impact factor: 5.469

6.  Prediction of "hot spots" of aggregation in disease-linked polypeptides.

Authors:  Natalia Sánchez de Groot; Irantzu Pallarés; Francesc X Avilés; Josep Vendrell; Salvador Ventura
Journal:  BMC Struct Biol       Date:  2005-09-30

7.  AGGRESCAN: a server for the prediction and evaluation of "hot spots" of aggregation in polypeptides.

Authors:  Oscar Conchillo-Solé; Natalia S de Groot; Francesc X Avilés; Josep Vendrell; Xavier Daura; Salvador Ventura
Journal:  BMC Bioinformatics       Date:  2007-02-27       Impact factor: 3.169

8.  Loss of metal ions, disulfide reduction and mutations related to familial ALS promote formation of amyloid-like aggregates from superoxide dismutase.

Authors:  Zeynep A Oztug Durer; Jeffrey A Cohlberg; Phong Dinh; Shelby Padua; Krista Ehrenclou; Sean Downes; James K Tan; Yoko Nakano; Christopher J Bowman; Jessica L Hoskins; Chuhee Kwon; Andrew Z Mason; Jorge A Rodriguez; Peter A Doucette; Bryan F Shaw; Joan Selverstone Valentine
Journal:  PLoS One       Date:  2009-03-27       Impact factor: 3.240

9.  Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases.

Authors:  Virginia Castillo; Salvador Ventura
Journal:  PLoS Comput Biol       Date:  2009-08-21       Impact factor: 4.475

Review 10.  Mechanisms of amyloid formation revealed by solution NMR.

Authors:  Theodoros K Karamanos; Arnout P Kalverda; Gary S Thompson; Sheena E Radford
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-05-27       Impact factor: 9.795

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