Literature DB >> 7844826

Poly(dA).poly(dT) forms very stable nucleosomes at higher temperatures.

H L Puhl1, M J Behe.   

Abstract

The synthetic polymer poly(dA).poly(dT) was long thought to be refractory to nucleosome formation. Several years ago our laboratory demonstrated that the polymer could be mixed with authentic nucleosomes in a low-salt exchange procedure to form a nucleoprotein complex that behaved in a manner identical with that of nucleosomes. Competitive exchange assays at 37 degrees C showed that the homopolymer reconstituted about as well as heterogenous-sequence DNA. However, studies by other laboratories have shown that the conformation of poly(dA).poly(dT) depends on temperature; the polymer converts from its well-known, atypical structure, found at ambient temperature, to a conformation more closely resembling a canonical B form as temperature is increased. We have measured the ability of the homopurine.homopyrimidine to form nucleosomes as a function of temperature. It is seen that poly(dA).poly(dT) forms nucleosomes more strongly as the temperature of the exchange mixture is increased, so that poly(dA).(dT) outcompetes heterogeneous-sequence DNA for histones at elevated temperatures.

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Year:  1995        PMID: 7844826     DOI: 10.1006/jmbi.1994.0046

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  9 in total

1.  Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo.

Authors:  B Suter; G Schnappauf; F Thoma
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

2.  Nonhistone Scm3 binds to AT-rich DNA to organize atypical centromeric nucleosome of budding yeast.

Authors:  Hua Xiao; Gaku Mizuguchi; Jan Wisniewski; Yingzi Huang; Debbie Wei; Carl Wu
Journal:  Mol Cell       Date:  2011-08-05       Impact factor: 17.970

3.  DNA sequence-dependent deformability deduced from protein-DNA crystal complexes.

Authors:  W K Olson; A A Gorin; X J Lu; L M Hock; V B Zhurkin
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-15       Impact factor: 11.205

4.  The Sequence of Nucleosomal DNA Modulates Sliding by the Chd1 Chromatin Remodeler.

Authors:  Jessica Winger; Gregory D Bowman
Journal:  J Mol Biol       Date:  2017-02-08       Impact factor: 5.469

5.  Chromatin remodeling during Saccharomyces cerevisiae ADH2 gene activation.

Authors:  L Verdone; G Camilloni; E Di Mauro; M Caserta
Journal:  Mol Cell Biol       Date:  1996-05       Impact factor: 4.272

6.  Temperature effect on poly(dA).poly(dT): molecular dynamics simulation studies of polymeric and oligomeric constructs.

Authors:  Sanchita Mukherjee; Sangeeta Kundu; Dhananjay Bhattacharyya
Journal:  J Comput Aided Mol Des       Date:  2014-05-28       Impact factor: 3.686

7.  Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo.

Authors:  M Shimizu; T Mori; T Sakurai; H Shindo
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

Review 8.  Organization of DNA in Mammalian Mitochondria.

Authors:  Géraldine Farge; Maria Falkenberg
Journal:  Int J Mol Sci       Date:  2019-06-05       Impact factor: 5.923

9.  GC content strongly influences the role of poly(dA) in the intrinsic nucleosome positioning in Saccharomyces cerevisiae.

Authors:  Edoardo Trotta
Journal:  Yeast       Date:  2022-03-29       Impact factor: 3.325

  9 in total

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