Literature DB >> 7841215

Automatic reduction of NMR spectroscopic data for statistical and pattern recognition classification of samples.

M Spraul1, P Neidig, U Klauck, P Kessler, E Holmes, J K Nicholson, B C Sweatman, S R Salman, R D Farrant, E Rahr.   

Abstract

A general method of automatically reducing NMR spectra to provide numerical descriptors of samples has been developed and investigated. These descriptors can be used as input to pattern recognition or multivariate algorithms for sample classification. The methods have been tested using 600 MHz one-dimensional 1H NMR spectra of biofluids which are complex mixtures. The approach is, in principle, applicable to multidimensional and heteronuclear NMR spectra and to other types of liquid samples such as oils and foodstuffs as well as to situations such as 1H or 31P NMR in vivo and solid state NMR in drug formulation analysis. The method relies upon apportioning the information in the spectra to individual contiguous segments and allowing specified regions of the spectra to be omitted. Three approaches, based on the number of peaks, the summed peak heights and the summed peak areas respectively in each segment, have been tested. The effect of segment width and overlap and the effects of manipulation of the NMR spectra have been evaluated in terms of the classification of the samples using principal components analysis. A simple method of generating NMR based spectral descriptors for object classification is thus proposed.

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Year:  1994        PMID: 7841215     DOI: 10.1016/0731-7085(94)00073-5

Source DB:  PubMed          Journal:  J Pharm Biomed Anal        ISSN: 0731-7085            Impact factor:   3.935


  16 in total

1.  Serum Metabolomic Profiles Identify ER-Positive Early Breast Cancer Patients at Increased Risk of Disease Recurrence in a Multicenter Population.

Authors:  Christopher D Hart; Alessia Vignoli; Leonardo Tenori; Gemma Leonora Uy; Ta Van To; Clement Adebamowo; Syed Mozammel Hossain; Laura Biganzoli; Emanuela Risi; Richard R Love; Claudio Luchinat; Angelo Di Leo
Journal:  Clin Cancer Res       Date:  2017-01-12       Impact factor: 12.531

2.  Serum metabolomic profiles evaluated after surgery may identify patients with oestrogen receptor negative early breast cancer at increased risk of disease recurrence. Results from a retrospective study.

Authors:  Leonardo Tenori; Catherine Oakman; Patrick G Morris; Ewa Gralka; Natalie Turner; Silvia Cappadona; Monica Fornier; Cliff Hudis; Larry Norton; Claudio Luchinat; Angelo Di Leo
Journal:  Mol Oncol       Date:  2014-08-10       Impact factor: 6.603

3.  Automated annotation and quantification of metabolites in 1H NMR data of biological origin.

Authors:  Erik Alm; Tove Slagbrand; K Magnus Aberg; Erik Wahlström; Ingela Gustafsson; Johan Lindberg
Journal:  Anal Bioanal Chem       Date:  2012-02-24       Impact factor: 4.142

4.  Bayesian deconvolution and quantification of metabolites in complex 1D NMR spectra using BATMAN.

Authors:  Jie Hao; Manuel Liebeke; William Astle; Maria De Iorio; Jacob G Bundy; Timothy M D Ebbels
Journal:  Nat Protoc       Date:  2014-05-22       Impact factor: 13.491

5.  Variable reference alignment: an improved peak alignment protocol for NMR spectral data with large intersample variation.

Authors:  Neil MacKinnon; Wencheng Ge; Amjad P Khan; Bagganahalli S Somashekar; Pratima Tripathi; Javed Siddiqui; John T Wei; Arul M Chinnaiyan; Thekkelnaycke M Rajendiran; Ayyalusamy Ramamoorthy
Journal:  Anal Chem       Date:  2012-05-29       Impact factor: 6.986

6.  New modes of data partitioning based on PARS peak alignment for improved multivariate biomarker/biopattern detection in 1H-NMR spectroscopic metabolic profiling of urine.

Authors:  R J O Torgrip; J Lindberg; M Linder; B Karlberg; S P Jacobsson; J Kolmert; I Gustafsson; I Schuppe-Koistinen
Journal:  Metabolomics       Date:  2006-04-08       Impact factor: 4.290

7.  Artificial neural networks for classification in metabolomic studies of whole cells using 1H nuclear magnetic resonance.

Authors:  D F Brougham; G Ivanova; M Gottschalk; D M Collins; A J Eustace; R O'Connor; J Havel
Journal:  J Biomed Biotechnol       Date:  2010-09-15

8.  A solution to the 1D NMR alignment problem using an extended generalized fuzzy Hough transform and mode support.

Authors:  Erik Alm; Ralf J O Torgrip; K Magnus Aberg; Ina Schuppe-Koistinen; Johan Lindberg
Journal:  Anal Bioanal Chem       Date:  2009-07-22       Impact factor: 4.142

9.  Bioinformatics tools for cancer metabolomics.

Authors:  Grigoriy Blekherman; Reinhard Laubenbacher; Diego F Cortes; Pedro Mendes; Frank M Torti; Steven Akman; Suzy V Torti; Vladimir Shulaev
Journal:  Metabolomics       Date:  2011-01-12       Impact factor: 4.290

10.  Reproducibility of NMR analysis of urine samples: impact of sample preparation, storage conditions, and animal health status.

Authors:  Christina Schreier; Werner Kremer; Fritz Huber; Sindy Neumann; Philipp Pagel; Kai Lienemann; Sabine Pestel
Journal:  Biomed Res Int       Date:  2013-06-23       Impact factor: 3.411

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