Literature DB >> 7827420

The agreement metric for labeled binary trees.

W Goddard1, E Kubicka, G Kubicki, F R McMorris.   

Abstract

Let S be a set of n objects. A binary tree of S is a binary tree whose leaves are labeled without repetition from S. The operation of pruning a tree T is that of removing some leaves from T and suppressing all inner vertices of degree 2 which are formed by this deletion. Given two trees T and U, an agreement tree is a tree that can be obtained from T as well as from U by pruning the fewest number of leaves from the two trees. A quadratic algorithm is presented for doing this and two metrics are defined based on agreement trees.

Mesh:

Year:  1994        PMID: 7827420     DOI: 10.1016/0025-5564(94)90012-4

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  11 in total

1.  Array Comparative Genomic Hybridizations: assessing the ability to recapture evolutionary relationships using an in silico approach.

Authors:  Luz B Gilbert; Lee Chae; Takao Kasuga; John W Taylor
Journal:  BMC Genomics       Date:  2011-09-21       Impact factor: 3.969

2.  Craniodental and Postcranial Characters of Non-Avian Dinosauria Often Imply Different Trees.

Authors:  Yimeng Li; Marcello Ruta; Matthew A Wills
Journal:  Syst Biol       Date:  2020-07-01       Impact factor: 15.683

3.  Phylogenetic inference with weighted codon evolutionary distances.

Authors:  Alexis Criscuolo; Christian J Michel
Journal:  J Mol Evol       Date:  2009-03-24       Impact factor: 2.395

4.  An improved bound on the Maximum Agreement Subtree problem.

Authors:  Mike Steel; László A Székely
Journal:  Appl Math Lett       Date:  2009-11-01       Impact factor: 4.055

5.  An application of supertree methods to Mammalian mitogenomic sequences.

Authors:  Véronique Campbell; François-Joseph Lapointe
Journal:  Evol Bioinform Online       Date:  2010-05-12       Impact factor: 1.625

6.  Array CGH phylogeny: how accurate are comparative genomic hybridization-based trees?

Authors:  Luz B Gilbert; Takao Kasuga; N Louise Glass; John W Taylor
Journal:  BMC Genomics       Date:  2011-10-06       Impact factor: 3.969

7.  The cobweb of life revealed by genome-scale estimates of horizontal gene transfer.

Authors:  Fan Ge; Li-San Wang; Junhyong Kim
Journal:  PLoS Biol       Date:  2005-08-30       Impact factor: 8.029

8.  The power of phylogenetic approaches to detect horizontally transferred genes.

Authors:  Maria S Poptsova; J Peter Gogarten
Journal:  BMC Evol Biol       Date:  2007-03-21       Impact factor: 3.260

9.  Performance of single and concatenated sets of mitochondrial genes at inferring metazoan relationships relative to full mitogenome data.

Authors:  Justin C Havird; Scott R Santos
Journal:  PLoS One       Date:  2014-01-08       Impact factor: 3.240

10.  Cophenetic metrics for phylogenetic trees, after Sokal and Rohlf.

Authors:  Gabriel Cardona; Arnau Mir; Francesc Rosselló; Lucía Rotger; David Sánchez
Journal:  BMC Bioinformatics       Date:  2013-01-16       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.