Literature DB >> 7827018

Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction.

D S Goodsell1, K Grzeskowiak, R E Dickerson.   

Abstract

The structure of the B-DNA decamer of sequence C-T-C-T-C-G-A-G-A-G shows a crossed arrangement of helices in the C2 crystal lattice. This is the fourth example of a crossed arrangement of B-DNA oligomers in a crystal, and in spite of the fact that each of these four crystallizes in a different lattice, all have nearly identical structures at the crossing contact. This ubiquitous crossing arrangement may be used to generate a structure for the Holliday junction that is fully consistent with the available physical data.

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Year:  1995        PMID: 7827018     DOI: 10.1021/bi00003a037

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Free radical yields in crystalline DNA X-irradiated at 4 K.

Authors:  M G Debije; W A Bernhard
Journal:  Radiat Res       Date:  1999-12       Impact factor: 2.841

2.  Electron paramagnetic resonance evidence for a C3' sugar radical in crystalline d(CTCTCGAGAG) X-irradiated at 4 K.

Authors:  M G Debije; W A Bernhard
Journal:  Radiat Res       Date:  2001-05       Impact factor: 2.841

3.  On the efficiency of hole and electron transfer from the hydration layer to DNA: An EPR study of crystalline DNA X-irradiated at 4 K.

Authors:  M G Debije; M D Strickler; W A Bernhard
Journal:  Radiat Res       Date:  2000-08       Impact factor: 2.841

4.  The structure of DNA within cationic lipid/DNA complexes.

Authors:  Chad S Braun; Gouri S Jas; Sirirat Choosakoonkriang; Gary S Koe; Janet G Smith; C Russell Middaugh
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

5.  The inherent properties of DNA four-way junctions: comparing the crystal structures of holliday junctions.

Authors:  Brandt F Eichman; Miguel Ortiz-Lombardía; Joan Aymamí; Miquel Coll; Pui Shing Ho
Journal:  J Mol Biol       Date:  2002-07-26       Impact factor: 5.469

6.  Hydration of the phosphate group in double-helical DNA.

Authors:  B Schneider; K Patel; H M Berman
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

7.  Structure of the Holliday junction intermediate in Cre-loxP site-specific recombination.

Authors:  D N Gopaul; F Guo; G D Van Duyne
Journal:  EMBO J       Date:  1998-07-15       Impact factor: 11.598

8.  Chirality of DNA trefoils: implications in intramolecular synapsis of distant DNA segments.

Authors:  S Y Shaw; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

9.  Structural variability and new intermolecular interactions of Z-DNA in crystals of d(pCpGpCpGpCpG).

Authors:  L Malinina; V Tereshko; E Ivanova; J A Subirana; V Zarytova; Y Nekrasov
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

10.  Differential stability of DNA crossovers in solution mediated by divalent cations.

Authors:  Péter Várnai; Youri Timsit
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

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