Literature DB >> 7816622

Suppression of mutations in the core of the Tetrahymena ribozyme by spermidine, ethanol and by substrate stabilization.

M Hanna1, J W Szostak.   

Abstract

We have previously described a collection of mutations in conserved residues of the core of the Tetrahymena self-splicing intron. Most of these single base substitutions have less than 10% of the activity of their parental intron derivative [Couture, S., et al., (1990) J. Mol. Biol., 215, 345-358]. We examined the effect of two agents known to stabilize RNA structure, spermidine and ethanol, on the activity of many of these mutant RNAs. In the presence of either 5 mM spermidine or 20% ethanol most substitution mutations were partially or completely suppressed. These conditions also increased the temperature optima of both wild-type and mutant ribozymes. In addition, we find that mutations are also suppressed by a high concentration of GTP, a substrate in the reaction which is bound specifically by the intron. Thus we observe a general suppression of mutations in an RNA enzyme (ribozyme) by spermidine, ethanol and by substrate stabilization. These results are consistent with the idea that most mutations destabilize the folded structure of the ribozyme and can be suppressed by any of a variety of stabilizing influences.

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Keywords:  Non-programmatic

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Year:  1994        PMID: 7816622      PMCID: PMC332078          DOI: 10.1093/nar/22.24.5326

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

1.  Unusual resistance of peptidyl transferase to protein extraction procedures.

Authors:  H F Noller; V Hoffarth; L Zimniak
Journal:  Science       Date:  1992-06-05       Impact factor: 47.728

2.  Effect of magnesium and polyamines on the structure of yeast tRNAPhe.

Authors:  P H Bolton; D R Kearns
Journal:  Biochim Biophys Acta       Date:  1977-07-05

3.  Crystal structure of yeast phenylalanine transfer RNA. II. Structural features and functional implications.

Authors:  S R Holbrook; J L Sussman; R W Warrant; S H Kim
Journal:  J Mol Biol       Date:  1978-08-25       Impact factor: 5.469

4.  Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA.

Authors:  G J Quigley; M M Teeter; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1978-01       Impact factor: 11.205

5.  High-resolution x-ray diffraction studies on a pure species of transfer RNA.

Authors:  J E Ladner; J T Finch; A Klug; B F Clark
Journal:  J Mol Biol       Date:  1972-12-14       Impact factor: 5.469

6.  Crystallographic refinement of yeast phenylalanine transfer RNA at 2-5A resolution.

Authors:  A Jack; J E Ladner; A Klug
Journal:  J Mol Biol       Date:  1976-12-25       Impact factor: 5.469

7.  Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: implications for biological catalysis by RNA.

Authors:  B L Bass; T R Cech
Journal:  Nature       Date:  1984 Apr 26-May 2       Impact factor: 49.962

8.  Substrate stabilization of lysozyme to thermal and guanidine hydrochloride denaturation.

Authors:  C N Pace; T McGrath
Journal:  J Biol Chem       Date:  1980-05-10       Impact factor: 5.157

9.  Proton exchange rates in transfer RNA as a function of spermidine and magnesium.

Authors:  J S Tropp; A G Redfield
Journal:  Nucleic Acids Res       Date:  1983-04-11       Impact factor: 16.971

10.  Correlation of substrate-stabilization patterns with proposed mechanisms for three nucleoside phosphorylases.

Authors:  T A Krenitsky; J V Tuttle
Journal:  Biochim Biophys Acta       Date:  1982-05-03
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  6 in total

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2.  Cryoenzymology of the hammerhead ribozyme.

Authors:  A L Feig; G E Ammons; O C Uhlenbeck
Journal:  RNA       Date:  1998-10       Impact factor: 4.942

3.  Multiple substrate binding sites in the ribozyme from Bacillus subtilis RNase P.

Authors:  T Pan; M Jakacka
Journal:  EMBO J       Date:  1996-05-01       Impact factor: 11.598

4.  Mg2+-independent hairpin ribozyme catalysis in hydrated RNA films.

Authors:  A A Seyhan; J M Burke
Journal:  RNA       Date:  2000-02       Impact factor: 4.942

5.  Enhanced deoxyribozyme-catalyzed RNA ligation in the presence of organic cosolvents.

Authors:  Anit K Behera; Kelsey J Schlund; Allen J Mason; Kennedy O Alila; Mengyu Han; Rebecca L Grout; Dana A Baum
Journal:  Biopolymers       Date:  2013-06       Impact factor: 2.505

Review 6.  Nucleic Acid Catalysis under Potential Prebiotic Conditions.

Authors:  Kristian Le Vay; Elia Salibi; Emilie Y Song; Hannes Mutschler
Journal:  Chem Asian J       Date:  2019-12-09
  6 in total

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