Literature DB >> 7800707

The recognition of protein structure and function from sequence: adding value to genome data.

A C May1, M S Johnson, S D Rufino, H Wako, Z Y Zhu, R Sowdhamini, N Srinivasan, M A Rodionov, T L Blundell.   

Abstract

The explosion of DNA sequence data from genome projects presents many challenges. For instance, we must extend our current knowledge of protein structure and function so that it can be applied to these new sequences. The derivation of rules for the relationships between sequence and structure allow us to recognize a common fold by the use of tertiary templates. New techniques enable us to begin to meet the challenge of rule-based modelling of distantly related proteins. This paper describes an integrated and knowledge-based approach to the prediction of protein structure and function which can maximize the value of sequence information.

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Year:  1994        PMID: 7800707     DOI: 10.1098/rstb.1994.0076

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  6 in total

1.  Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome.

Authors:  Khader Shameer; Ramanathan Sowdhamini
Journal:  J Clin Bioinforma       Date:  2012-04-03

2.  HORIBALFRE program: Higher Order Residue Interactions Based ALgorithm for Fold REcognition.

Authors:  Pandurangan Sundaramurthy; Raashi Sreenivasan; Khader Shameer; Sunita Gakkhar; Ramanathan Sowdhamini
Journal:  Bioinformation       Date:  2011-12-10

3.  Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.

Authors:  Khader Shameer; Benjamin S Glicksberg; Rachel Hodos; Kipp W Johnson; Marcus A Badgeley; Ben Readhead; Max S Tomlinson; Timothy O'Connor; Riccardo Miotto; Brian A Kidd; Rong Chen; Avi Ma'ayan; Joel T Dudley
Journal:  Brief Bioinform       Date:  2018-07-20       Impact factor: 11.622

4.  Evolution of function in the "two dinucleotide binding domains" flavoproteins.

Authors:  Sunil Ojha; Elaine C Meng; Patricia C Babbitt
Journal:  PLoS Comput Biol       Date:  2007-07       Impact factor: 4.475

5.  A comprehensive analysis of 40 blind protein structure predictions.

Authors:  Ram Samudrala; Michael Levitt
Journal:  BMC Struct Biol       Date:  2002-08-01

6.  Genome-wide survey of DNA-binding proteins in Arabidopsis thaliana: analysis of distribution and functions.

Authors:  Sony Malhotra; Ramanathan Sowdhamini
Journal:  Nucleic Acids Res       Date:  2013-06-17       Impact factor: 16.971

  6 in total

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