Literature DB >> 7798210

Analysis of an invariant cofactor-protein interaction in thiamin diphosphate-dependent enzymes by site-directed mutagenesis. Glutamic acid 418 in transketolase is essential for catalysis.

C Wikner1, L Meshalkina, U Nilsson, M Nikkola, Y Lindqvist, M Sundström, G Schneider.   

Abstract

A homologous expression system and a purification protocol for pure, highly active recombinant yeast transketolase have been developed. The invariant transketolase residue Glu418, which forms a hydrogen bond to the N-1' nitrogen atom of the pyrimidine ring of the cofactor thiamin diphosphate has been replaced by glutamine and alanine. Crystallographic analyses of the mutants show that these amino acid substitutions do not induce structural changes beyond the site of mutation. In both cases, the cofactor binds in a manner identical to the wild-type enzyme. Significant differences in the CD spectra of the mutant transketolases compared with the spectrum of wild-type enzyme indicate differences in the electron distribution of the aminopyrimidine ring of the cofactor. The E418Q mutant shows 2% and the E418A mutant shows about 0.1% of the catalytic activity of wild-type enzyme. The affinities of the mutant enzymes for thiamin diphosphate are comparable with wild-type transketolase. The hydrogen bond between the coenzyme and the side chain of Glu418 is thus not required for coenzyme binding but essential for catalytic activity. The results demonstrate the functional importance of this interaction and support the molecular model for cofactor deprotonation, the first step in enzymatic thiamin catalysis.

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Year:  1994        PMID: 7798210

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  14 in total

1.  Thiamin Diphosphate Activation in 1-Deoxy-d-xylulose 5-Phosphate Synthase: Insights into the Mechanism and Underlying Intermolecular Interactions.

Authors:  Justin K White; Sumit Handa; Sai Lakshmana Vankayala; David J Merkler; H Lee Woodcock
Journal:  J Phys Chem B       Date:  2016-09-12       Impact factor: 2.991

2.  1-Deoxy-D-xylulose 5-phosphate synthase, the gene product of open reading frame (ORF) 2816 and ORF 2895 in Rhodobacter capsulatus.

Authors:  F M Hahn; L M Eubanks; C A Testa; B S Blagg; J A Baker; C D Poulter
Journal:  J Bacteriol       Date:  2001-01       Impact factor: 3.490

3.  Snapshot of a key intermediate in enzymatic thiamin catalysis: crystal structure of the alpha-carbanion of (alpha,beta-dihydroxyethyl)-thiamin diphosphate in the active site of transketolase from Saccharomyces cerevisiae.

Authors:  Erik Fiedler; Stina Thorell; Tatyana Sandalova; Ralph Golbik; Stephan König; Gunter Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

Review 4.  Investigating metabolite-protein interactions: an overview of available techniques.

Authors:  Grace Xiaolu Yang; Xiyan Li; Michael Snyder
Journal:  Methods       Date:  2012-06-28       Impact factor: 3.608

5.  Dedicated roles of plastid transketolases during the early onset of isoprenoid biogenesis in pepper fruits1.

Authors:  F Bouvier; A d'Harlingue; C Suire; R A Backhaus; B Camara
Journal:  Plant Physiol       Date:  1998-08       Impact factor: 8.340

6.  The role of residues glutamate-50 and phenylalanine-496 in Zymomonas mobilis pyruvate decarboxylase.

Authors:  J M Candy; J Koga; P F Nixon; R G Duggleby
Journal:  Biochem J       Date:  1996-05-01       Impact factor: 3.857

7.  Snapshot of a reaction intermediate: analysis of benzoylformate decarboxylase in complex with a benzoylphosphonate inhibitor.

Authors:  Gabriel S Brandt; Malea M Kneen; Sumit Chakraborty; Ahmet T Baykal; Natalia Nemeria; Alejandra Yep; David I Ruby; Gregory A Petsko; George L Kenyon; Michael J McLeish; Frank Jordan; Dagmar Ringe
Journal:  Biochemistry       Date:  2009-04-21       Impact factor: 3.162

8.  Critical role of arg433 in rat transketolase activity as probed by site-directed mutagenesis.

Authors:  Y Soh; B J Song; J Jeng; A T Kallarakal
Journal:  Biochem J       Date:  1998-07-15       Impact factor: 3.857

Review 9.  Reaction mechanisms of thiamin diphosphate enzymes: defining states of ionization and tautomerization of the cofactor at individual steps.

Authors:  Natalia S Nemeria; Sumit Chakraborty; Anand Balakrishnan; Frank Jordan
Journal:  FEBS J       Date:  2009-03-16       Impact factor: 5.542

Review 10.  Bacterial Branched-Chain Amino Acid Biosynthesis: Structures, Mechanisms, and Drugability.

Authors:  Tathyana M Amorim Franco; John S Blanchard
Journal:  Biochemistry       Date:  2017-11-07       Impact factor: 3.162

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