Literature DB >> 7796917

Atomic structure at 2.5 A resolution of uridine phosphorylase from E. coli as refined in the monoclinic crystal lattice.

A M Mikhailov, A N Popov, E V Blagova, E A Smirnova, B K Vainshtein, C Mao, Sh R Armstrong, S E Ealick, A A Komissarov.   

Abstract

Uridine phosphorylase from E. coli (Upase) has been crystallized using vapor diffusion technique in a new monoclinic crystal form. The structure was determined by the molecular replacement method at 2.5 A resolution. The coordinates of the trigonal crystal form were used as a starting model and the refinement by the program XPLOR led to the R-factor of 18.6%. The amino acid fold of the protein was found to be the same as that in the trigonal crystals. The positions of flexible regions were refined. The conclusion about the involvement in the active site is in good agreement with the results of the biochemical experiments.

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Year:  1995        PMID: 7796917     DOI: 10.1016/0014-5793(95)00489-v

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  10 in total

1.  Glycal formation in crystals of uridine phosphorylase.

Authors:  Debamita Paul; Seán E O'Leary; Kanagalaghatta Rajashankar; Weiming Bu; Angela Toms; Ethan C Settembre; Jennie M Sanders; Tadhg P Begley; Steven E Ealick
Journal:  Biochemistry       Date:  2010-04-27       Impact factor: 3.162

2.  The crystal structure of Streptococcus pyogenes uridine phosphorylase reveals a distinct subfamily of nucleoside phosphorylases.

Authors:  Timothy H Tran; S Christoffersen; Paula W Allan; William B Parker; Jure Piskur; I Serra; M Terreni; Steven E Ealick
Journal:  Biochemistry       Date:  2011-07-08       Impact factor: 3.162

Review 3.  Structural analyses reveal two distinct families of nucleoside phosphorylases.

Authors:  Matthew J Pugmire; Steven E Ealick
Journal:  Biochem J       Date:  2002-01-01       Impact factor: 3.857

4.  A novel structural mechanism for redox regulation of uridine phosphorylase 2 activity.

Authors:  Tarmo P Roosild; Samantha Castronovo; Adelbert Villoso; Amy Ziemba; Giuseppe Pizzorno
Journal:  J Struct Biol       Date:  2011-08-10       Impact factor: 2.867

5.  The crystal structure and activity of a putative trypanosomal nucleoside phosphorylase reveal it to be a homodimeric uridine phosphorylase.

Authors:  Eric T Larson; Devaraja G Mudeppa; J Robert Gillespie; Natascha Mueller; Alberto J Napuli; Jennifer A Arif; Jenni Ross; Tracy L Arakaki; Angela Lauricella; George Detitta; Joseph Luft; Frank Zucker; Christophe L M J Verlinde; Erkang Fan; Wesley C Van Voorhis; Frederick S Buckner; Pradipsinh K Rathod; Wim G J Hol; Ethan A Merritt
Journal:  J Mol Biol       Date:  2010-01-11       Impact factor: 5.469

6.  Active site conformational dynamics in human uridine phosphorylase 1.

Authors:  Tarmo P Roosild; Samantha Castronovo
Journal:  PLoS One       Date:  2010-09-14       Impact factor: 3.240

7.  Leishmania infantum 5'-Methylthioadenosine Phosphorylase presents relevant structural divergence to constitute a potential drug target.

Authors:  Hela Abid; Emna Harigua-Souiai; Thouraya Mejri; Mourad Barhoumi; Ikram Guizani
Journal:  BMC Struct Biol       Date:  2017-12-19

8.  Inferences from structural comparison: flexibility, secondary structure wobble and sequence alignment optimization.

Authors:  Gaihua Zhang; Zhen Su
Journal:  BMC Bioinformatics       Date:  2012-09-11       Impact factor: 3.169

9.  Implications of the structure of human uridine phosphorylase 1 on the development of novel inhibitors for improving the therapeutic window of fluoropyrimidine chemotherapy.

Authors:  Tarmo P Roosild; Samantha Castronovo; Michael Fabbiani; Giuseppe Pizzorno
Journal:  BMC Struct Biol       Date:  2009-03-16

Review 10.  Strained Conformations of Nucleosides in Active Sites of Nucleoside Phosphorylases.

Authors:  Irina A Il'icheva; Konstantin M Polyakov; Sergey N Mikhailov
Journal:  Biomolecules       Date:  2020-04-05
  10 in total

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