Literature DB >> 7787083

Analysis of high resolution recordings of motor movement.

S M Block1, K Svoboda.   

Abstract

The development of in vitro motility assays for motor proteins has been accompanied by a parallel development of advanced optical instrumentation capable of recording motion at the molecular level. Devices now exist that can record displacements to better than 0.1 nm at bandwidths in excess of 10 kHz, and that can place controlled forces up to many pN on single motors. Ultra-high resolution data from experiments are now pouring in. The analysis and subsequent interpretation of experimental records, which are inevitably contaminated with high levels of thermal noise, remain an ongoing challenge. This essay examines selected issues relating to this challenge and discusses some alternative approaches.

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Year:  1995        PMID: 7787083      PMCID: PMC1281932     

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

Review 1.  Myosin step size: estimates from motility assays and shortening muscle.

Authors:  K Burton
Journal:  J Muscle Res Cell Motil       Date:  1992-12       Impact factor: 2.698

2.  Fluctuation driven ratchets: Molecular motors.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-03-14       Impact factor: 9.161

3.  Bead movement by single kinesin molecules studied with optical tweezers.

Authors:  S M Block; L S Goldstein; B J Schnapp
Journal:  Nature       Date:  1990-11-22       Impact factor: 49.962

4.  Movement of microtubules by single kinesin molecules.

Authors:  J Howard; A J Hudspeth; R D Vale
Journal:  Nature       Date:  1989-11-09       Impact factor: 49.962

5.  Tracking kinesin-driven movements with nanometre-scale precision.

Authors:  J Gelles; B J Schnapp; M P Sheetz
Journal:  Nature       Date:  1988-02-04       Impact factor: 49.962

6.  Direct observation of kinesin stepping by optical trapping interferometry.

Authors:  K Svoboda; C F Schmidt; B J Schnapp; S M Block
Journal:  Nature       Date:  1993-10-21       Impact factor: 49.962

7.  High-resolution tracking of microtubule motility driven by a single kinesin motor.

Authors:  F Malik; D Brillinger; R D Vale
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-10       Impact factor: 11.205

8.  Single myosin molecule mechanics: piconewton forces and nanometre steps.

Authors:  J T Finer; R M Simmons; J A Spudich
Journal:  Nature       Date:  1994-03-10       Impact factor: 49.962

9.  Microtubule movement by a biotinated kinesin bound to streptavidin-coated surface.

Authors:  E Berliner; H K Mahtani; S Karki; L F Chu; J E Cronan; J Gelles
Journal:  J Biol Chem       Date:  1994-03-18       Impact factor: 5.157

10.  Sliding distance of actin filament induced by a myosin crossbridge during one ATP hydrolysis cycle.

Authors:  T Yanagida; T Arata; F Oosawa
Journal:  Nature       Date:  1985 Jul 25-31       Impact factor: 49.962

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  18 in total

1.  Quantal sarcomere-length changes in relaxed single myofibrils.

Authors:  F Blyakhman; A Tourovskaya; G H Pollack
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

2.  Direct observation of processive exoribonuclease motion using optical tweezers.

Authors:  Furqan M Fazal; Daniel J Koslover; Ben F Luisi; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

3.  Direct observation of base-pair stepping by RNA polymerase.

Authors:  Elio A Abbondanzieri; William J Greenleaf; Joshua W Shaevitz; Robert Landick; Steven M Block
Journal:  Nature       Date:  2005-11-13       Impact factor: 49.962

Review 4.  Kinesin motor mechanics: binding, stepping, tracking, gating, and limping.

Authors:  Steven M Block
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

5.  Kinesin steps do not alternate in size.

Authors:  Adrian N Fehr; Charles L Asbury; Steven M Block
Journal:  Biophys J       Date:  2007-12-14       Impact factor: 4.033

6.  New insights into the workings of the ultimate swimming machine.

Authors:  K Svoboda
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

7.  Direct tests of muscle cross-bridge theories: predictions of a Brownian dumbbell model for position-dependent cross-bridge lifetimes and step sizes with an optically trapped actin filament.

Authors:  D A Smith
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

8.  Kinesin walks the line: single motors observed by atomic force microscopy.

Authors:  Iwan A T Schaap; Carolina Carrasco; Pedro J de Pablo; Christoph F Schmidt
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

9.  Preparation of bead-tailed actin filaments: estimation of the torque produced by the sliding force in an in vitro motility assay.

Authors:  N Suzuki; H Miyata; S Ishiwata; K Kinosita
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

10.  Hidden-Markov methods for the analysis of single-molecule actomyosin displacement data: the variance-Hidden-Markov method.

Authors:  D A Smith; W Steffen; R M Simmons; J Sleep
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

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