Literature DB >> 7787039

13C multiplet nuclear magnetic resonance relaxation-derived ring puckering and backbone dynamics in proline-containing glycine-based peptides.

D Mikhailov1, V A Daragan, K H Mayo.   

Abstract

13CH2-multiplet nuclear magnetic resonance relaxation studies on proline (P)-containing glycine (G)-based peptides, GP, PG, GPG, PGG, and GPGG, provided numerous dipolar auto- and cross-correlation times for various motional model analyses of backbone and proline-ring bond rotations. Molecular dynamics simulations and bond rotation energy profiles were calculated to assess which motions could contribute most to observed relaxation phenomena. Results indicate that proline restricts backbone psi 1, psi 2, and phi 2 motions by 50% relative to those found for a polyglycine control peptide. psi 1 rotations are more restricted in the trans-proline isomer state than in the cis form. A two-state jump model best approximates proline ring puckering which in water could occur either by the C gamma endo-exo or by the C2 interconversion mechanism. The temperature dependence (5 degrees to 75 degrees C) of C beta, and C gamma, and C delta angular changes is rather flat, suggesting a near zero enthalpic contribution to the ring puckering process. In lower dielectric solvents, dimethylsulfoxide and methanol, which may mimic the hydrophobic environment within a protein, the endo-exo mechanism is preferred.

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Year:  1995        PMID: 7787039      PMCID: PMC1282048          DOI: 10.1016/S0006-3495(95)80326-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  2 in total

Review 1.  Protein folding: local structures, domains, subunits, and assemblies.

Authors:  R Jaenicke
Journal:  Biochemistry       Date:  1991-04-02       Impact factor: 3.162

2.  Tri- and diglycine backbone rotational dynamics investigated by 13C NMR multiplet relaxation and molecular dynamics simulations.

Authors:  V A Daragan; K H Mayo
Journal:  Biochemistry       Date:  1993-11-02       Impact factor: 3.162

  2 in total
  4 in total

1.  Internal motional amplitudes and correlated bond rotations in an alpha-helical peptide derived from 13C and 15N NMR relaxation.

Authors:  D Idiyatullin; A Krushelnitsky; I Nesmelova; F Blanco; V A Daragan; L Serrano; K H Mayo
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

2.  Solid-state NMR study reveals collagen I structural modifications of amino acid side chains upon fibrillogenesis.

Authors:  Paulo De Sa Peixoto; Guillaume Laurent; Thierry Azaïs; Gervaise Mosser
Journal:  J Biol Chem       Date:  2013-01-22       Impact factor: 5.157

3.  Hydroxyproline Ring Pucker Causes Frustration of Helix Parameters in the Collagen Triple Helix.

Authors:  W Ying Chow; Dominique Bihan; Chris J Forman; David A Slatter; David G Reid; David J Wales; Richard W Farndale; Melinda J Duer
Journal:  Sci Rep       Date:  2015-07-29       Impact factor: 4.379

4.  Motional timescale predictions by molecular dynamics simulations: case study using proline and hydroxyproline sidechain dynamics.

Authors:  Abil E Aliev; Martin Kulke; Harmeet S Khaneja; Vijay Chudasama; Tom D Sheppard; Rachel M Lanigan
Journal:  Proteins       Date:  2013-09-17
  4 in total

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