Literature DB >> 7785768

A bisulfite method of 5-methylcytosine mapping that minimizes template degradation.

A M Raizis1, F Schmitt, J P Jost.   

Abstract

The bisulfite method is a highly sensitive approach to 5-methylcytosine mapping that utilizes the capability of the polymerase chain reaction to exponentially amplify DNA. We have observed that the bisulfite reaction results in a significant level of template degradation due to DNA depurination. Furthermore, our data suggest that the DNA fragmentation which occurs limits the sensitivity of the method. We describe a simple solution to limit degradation of the DNA template.

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Year:  1995        PMID: 7785768     DOI: 10.1006/abio.1995.1204

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  56 in total

1.  Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695.

Authors:  J Vitkute; K Stankevicius; G Tamulaitiene; Z Maneliene; A Timinskas; D E Berg; A Janulaitis
Journal:  J Bacteriol       Date:  2001-01       Impact factor: 3.490

2.  Overexpression of 5-methylcytosine DNA glycosylase in human embryonic kidney cells EcR293 demethylates the promoter of a hormone-regulated reporter gene.

Authors:  B Zhu; D Benjamin; Y Zheng; H Angliker; S Thiry; M Siegmann; J P Jost
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

3.  Bisulfite genomic sequencing: systematic investigation of critical experimental parameters.

Authors:  C Grunau; S J Clark; A Rosenthal
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

4.  Tissue-specific silencing of a transgene in rice.

Authors:  A Klöti; X He; I Potrykus; T Hohn; J Fütterer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-19       Impact factor: 11.205

5.  Improved PCR-BSP assay for multiplex methylation pattern analysis in minimal amount of DNA.

Authors:  Jianhui Wang; Minghui Yu; Kai Li; Junhua Xiao; Yuxun Zhou
Journal:  Mol Biotechnol       Date:  2009-03-31       Impact factor: 2.695

6.  Non-symmetrical cytosine methylation in tobacco pollen DNA.

Authors:  E J Oakeley; J P Jost
Journal:  Plant Mol Biol       Date:  1996-07       Impact factor: 4.076

Review 7.  Identifying 5-methylcytosine and related modifications in DNA genomes.

Authors:  T Rein; M L DePamphilis; H Zorbas
Journal:  Nucleic Acids Res       Date:  1998-05-15       Impact factor: 16.971

8.  Host-cell-determined methylation of specific Epstein-Barr virus promoters regulates the choice between distinct viral latency programs.

Authors:  B C Schaefer; J L Strominger; S H Speck
Journal:  Mol Cell Biol       Date:  1997-01       Impact factor: 4.272

9.  A modified and improved method for bisulphite based cytosine methylation analysis.

Authors:  A Olek; J Oswald; J Walter
Journal:  Nucleic Acids Res       Date:  1996-12-15       Impact factor: 16.971

10.  Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6.

Authors:  Ryuichi Ono; Hirosuke Shiura; Hiroyuki Aburatani; Takashi Kohda; Tomoko Kaneko-Ishino; Fumitoshi Ishino
Journal:  Genome Res       Date:  2003-07       Impact factor: 9.043

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