Literature DB >> 7783223

Searching tRNA sequences for relatedness to aminoacyl-tRNA synthetase families.

H B Nicholas1, W H McClain.   

Abstract

tRNA sequences were analyzed for sequence features correlated with known classes of aminoacyl-tRNA synthetase enzymes. The tRNAs were searched for distinguishing nucleotides anywhere in their sequences. The analyses did not find nucleotides predictive of synthetase class membership. We conclude that such nucleotides never existed in tRNA sequences or that they existed and were lost from many of the tRNA sequences during evolution.

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Year:  1995        PMID： 7783223     DOI： 10.1007/bf00166616

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  16 in total

Review 1.  Transfer RNAs for primordial amino acids contain remnants of a primitive code at position 3 to 5.

Authors:  W Möller; G M Janssen
Journal:  Biochimie       Date:  1990-05       Impact factor: 4.079

2.  How old is the genetic code? Statistical geometry of tRNA provides an answer.

Authors:  M Eigen; B F Lindemann; M Tietze; R Winkler-Oswatitsch; A Dress; A von Haeseler
Journal:  Science       Date:  1989-05-12       Impact factor: 47.728

3.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; T Hartmann; J Weber; J Blank; R Zeidler
Journal:  Nucleic Acids Res       Date:  1989       Impact factor: 16.971

4.  Differences between transfer RNA molecules.

Authors:  W H McClain; H B Nicholas
Journal:  J Mol Biol       Date:  1987-04-20       Impact factor: 5.469

5.  The phylogeny of tRNA sequences provides evidence for ambiguity reduction in the origin of the genetic code.

Authors:  W M Fitch; K Upper
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

Review 6.  Rules that govern tRNA identity in protein synthesis.

Authors:  W H McClain
Journal:  J Mol Biol       Date:  1993-11-20       Impact factor: 5.469

7.  Clustering of transfer RNAs by cell type and amino acid specificity.

Authors:  H B Nicholas; S B Graves
Journal:  J Mol Biol       Date:  1983-12-05       Impact factor: 5.469

8.  Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution.

Authors:  M A Rould; J J Perona; D Söll; T A Steitz
Journal:  Science       Date:  1989-12-01       Impact factor: 47.728

9.  Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs.

Authors:  G Eriani; M Delarue; O Poch; J Gangloff; D Moras
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Authors:  J Cavarelli; G Eriani; B Rees; M Ruff; M Boeglin; A Mitschler; F Martin; J Gangloff; J C Thierry; D Moras
Journal:  EMBO J       Date:  1994-01-15       Impact factor: 11.598
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  12 in total

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Journal:  RNA       Date:  2006-12-12       Impact factor: 4.942

Review 3.  Partition of aminoacyl-tRNA synthetases in two different structural classes dating back to early metabolism: implications for the origin of the genetic code and the nature of protein sequences.

Authors:  M Delarue
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

4.  The presence of codon-anticodon pairs in the acceptor stem of tRNAs.

Authors:  S Rodin; A Rodin; S Ohno
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-14       Impact factor: 11.205

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Journal:  DNA Res       Date:  2012-02-28       Impact factor: 4.458

6.  A unified model of the standard genetic code.

Authors:  Marco V José; Gabriel S Zamudio; Eberto R Morgado
Journal:  R Soc Open Sci       Date:  2017-03-01       Impact factor: 2.963

7.  On the evolution of the standard genetic code: vestiges of critical scale invariance from the RNA world in current prokaryote genomes.

Authors:  Marco V José; Tzipe Govezensky; José A García; Juan R Bobadilla
Journal:  PLoS One       Date:  2009-02-02       Impact factor: 3.240

8.  Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification.

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9.  In silico detection of tRNA sequence features characteristic to aminoacyl-tRNA synthetase class membership.

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Journal:  Nucleic Acids Res       Date:  2007-08-17       Impact factor: 16.971

10.  Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.

Authors:  Suvakanta Barik; Ashutosh Kumar; Shabari Sarkar Das; Sandeep Yadav; Vibhav Gautam; Archita Singh; Sharmila Singh; Ananda K Sarkar
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