Literature DB >> 7779802

The crystal structure of r(CCCCGGGG) in two distinct lattices.

S Portmann1, N Usman, M Egli.   

Abstract

The structure of the RNA octamer r(C4G4) has been determined in two different crystal forms. The conformations of the RNA duplex in the rhombohedral and hexagonal lattices display only minimal deviations, demonstrating that the RNA double helix is considerably less deformable than the DNA double helix. For the first time the crystal structures of an A-RNA and an A-DNA with identical sequence can now be compared. The large number of ordered water molecules observed in the minor groove of the RNA duplex suggests that an important contribution to its higher rigidity derives from the improved hydration due to the presence of the 2'-hydroxyl groups. Our finding that the conformation of the RNA double helix is virtually unaffected by different crystal packing modes provides evidence that proteins may not alter the conformation of RNA stem regions in a significant way.

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Year:  1995        PMID: 7779802     DOI: 10.1021/bi00023a002

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  B-form to A-form conversion by a 3'-terminal ribose: crystal structure of the chimera d(CCACTAGTG)r(G).

Authors:  M C Wahl; M Sundaralingam
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

2.  Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge.

Authors:  Y Xiong; M Sundaralingam
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

3.  The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery.

Authors:  Leven M Wadley; Anna Marie Pyle
Journal:  Nucleic Acids Res       Date:  2004-12-17       Impact factor: 16.971

4.  Conformational properties and thermodynamics of the RNA duplex r(CGCAAAUUUGCG)2: comparison with the DNA analogue d(CGCAAATTTGCG)2.

Authors:  M R Conte; G L Conn; T Brown; A N Lane
Journal:  Nucleic Acids Res       Date:  1997-07-01       Impact factor: 16.971

5.  A new way to see RNA.

Authors:  Kevin S Keating; Elisabeth L Humphris; Anna Marie Pyle
Journal:  Q Rev Biophys       Date:  2011-05-18       Impact factor: 5.318

6.  Nucleic acid helix structure determination from NMR proton chemical shifts.

Authors:  Ramon M van der Werf; Marco Tessari; Sybren S Wijmenga
Journal:  J Biomol NMR       Date:  2013-04-06       Impact factor: 2.835

7.  Crystal structure of an RNA duplex containing phenyl-ribonucleotides, hydrophobic isosteres of the natural pyrimidines.

Authors:  G Minasov; J Matulic-Adamic; C J Wilds; P Haeberli; N Usman; L Beigelman; M Egli
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

8.  A sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA.

Authors:  B Masquida; C Sauter; E Westhof
Journal:  RNA       Date:  1999-10       Impact factor: 4.942

9.  X-ray crystal structure of a dimethylene sulfone-bridged ribonucleotide dimer in a single-stranded state.

Authors:  B Hyrup; C Richert; T Schulte-Herbrüggen; S A Benner; M Egli
Journal:  Nucleic Acids Res       Date:  1995-07-11       Impact factor: 16.971

Review 10.  Crystallographic studies of chemically modified nucleic acids: a backward glance.

Authors:  Martin Egli; Pradeep S Pallan
Journal:  Chem Biodivers       Date:  2010-01       Impact factor: 2.408

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