Literature DB >> 7776370

Headful packaging revisited: the packaging of more than one DNA molecule into a bacteriophage P1 head.

J S Coren1, J C Pierce, N Sternberg.   

Abstract

Like a variety of other bacteriophages, such as T4 and P22, bacteriophage P1 packages DNA by a "headful" mechanism in which the capacity of the viral capsid determines the size of the single DNA molecule that is packaged. Because of the long-standing and general acceptance of this packaging mechanism, we were surprised to discover that some of our observations, using the in vitro P1 packaging system, could be explained by the packaging of less than headful-sized (< 110 kb) DNA molecules into a P1 capsid. To account for these observations, we describe results that support a model of in vitro P1 packaging in which multiple less than headful-sized DNA molecules are taken into a P1 head until that head has been filled. The results further suggest that the phage so generated can occasionally inject more than one DNA molecule into a cell upon viral infection. The data that supports these conclusions are: (1) the DNAs of the circular P1 cloning vectors pAd10sacBII (32 kb) and pNS358 (14 kb) are packaged in vitro with an efficiency of about 6 to 12% of that of longer concatemers of these DNAs. (2) The in vitro packaging of two differentially marked, less than 18 kb plasmid DNAs in the same reaction results in the production of a phage that can occasionally inject both DNAs into the same cell upon infection. (3) Virus particles generated by the packaging of either pAd10sacBII plasmid DNA or the two differently marked plasmids have a density in CsCl equilibrium gradients that is the same as P1 plaque-forming phage, suggesting that the former phage contain a headful of DNA. These results cannot be explained by Cre-mediated site-specific recombination between plasmids in the P1 packaging extracts. Finally, we present in vivo experiments that are also consistent with the headful packaging of multiple DNAs into a P1 head.

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Year:  1995        PMID: 7776370     DOI: 10.1006/jmbi.1995.0287

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  16 in total

1.  Direct sequencing of bacterial and P1 artificial chromosome-nested deletions for identifying position-specific single-nucleotide polymorphisms.

Authors:  P K Chatterjee; D P Yarnall; S A Haneline; M M Godlevski; S J Thornber; P S Robinson; H E Davies; N J White; J H Riley; N S Shepherd
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

2.  Mutually exclusive recombination of wild-type and mutant loxP sites in vivo facilitates transposon-mediated deletions from both ends of genomic DNA in PACs.

Authors:  Pradeep K Chatterjee; Leighcraft A Shakes; Deepak K Srivastava; Douglas M Garland; Ken R Harewood; Kyle J Moore; Jonathon S Coren
Journal:  Nucleic Acids Res       Date:  2004-10-19       Impact factor: 16.971

3.  Scalable plasmid transfer using engineered P1-based phagemids.

Authors:  Joshua T Kittleson; Will DeLoache; Hsiao-Ying Cheng; J Christopher Anderson
Journal:  ACS Synth Biol       Date:  2012-08-30       Impact factor: 5.110

4.  A helper-dependent system for adenovirus vector production helps define a lower limit for efficient DNA packaging.

Authors:  R J Parks; F L Graham
Journal:  J Virol       Date:  1997-04       Impact factor: 5.103

5.  Isolating large nested deletions in bacterial and P1 artificial chromosomes by in vivo P1 packaging of products of Cre-catalysed recombination between the endogenous and a transposed loxP site.

Authors:  P K Chatterjee; J S Coren
Journal:  Nucleic Acids Res       Date:  1997-06-01       Impact factor: 16.971

Review 6.  Popping the cork: mechanisms of phage genome ejection.

Authors:  Ian J Molineux; Debabrata Panja
Journal:  Nat Rev Microbiol       Date:  2013-02-04       Impact factor: 60.633

7.  In vitro assembly of alphavirus cores by using nucleocapsid protein expressed in Escherichia coli.

Authors:  T L Tellinghuisen; A E Hamburger; B R Fisher; R Ostendorp; R J Kuhn
Journal:  J Virol       Date:  1999-07       Impact factor: 5.103

8.  High-frequency phage-mediated gene transfer among Escherichia coli cells, determined at the single-cell level.

Authors:  Takehiko Kenzaka; Katsuji Tani; Akiko Sakotani; Nobuyasu Yamaguchi; Masao Nasu
Journal:  Appl Environ Microbiol       Date:  2007-03-23       Impact factor: 4.792

9.  Silage collected from dairy farms harbors an abundance of listeriaphages with considerable host range and genome size diversity.

Authors:  Kitiya Vongkamjan; Andrea Moreno Switt; Henk C den Bakker; Esther D Fortes; Martin Wiedmann
Journal:  Appl Environ Microbiol       Date:  2012-10-05       Impact factor: 4.792

10.  Minimal cross-recombination between wild-type and loxP511 sites in vivo facilitates truncating both ends of large DNA inserts in pBACe3.6 and related vectors.

Authors:  Leighcraft A Shakes; Douglas M Garland; Deepak K Srivastava; Ken R Harewood; Pradeep K Chatterjee
Journal:  Nucleic Acids Res       Date:  2005-08-01       Impact factor: 16.971

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