Literature DB >> 7773774

De novo design of integral membrane proteins.

P Whitley1, I Nilsson, G von Heijne.   

Abstract

We have designed integral membrane proteins with one, two and four hydrophobic transmembrane segments of highly simplified amino acid composition and with appropriately placed positively charged lysine residues intended to control the overall membrane orientation. When expressed in Escherichia coli, these model proteins insert efficiently into the inner membrane and adopt the predicted topologies. This demonstrates the feasibility of de novo design of multi-spanning integral membrane proteins, and opens up new possibilities for membrane protein engineering.

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Year:  1994        PMID: 7773774     DOI: 10.1038/nsb1294-858

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  17 in total

1.  Divergent evolution of membrane protein topology: the Escherichia coli RnfA and RnfE homologues.

Authors:  A Sääf; M Johansson; E Wallin; G von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

2.  New Escherichia coli outer membrane proteins identified through prediction and experimental verification.

Authors:  Paola Marani; Samuel Wagner; Louise Baars; Pierre Genevaux; Jan-Willem de Gier; Ingmarie Nilsson; Rita Casadio; Gunnar von Heijne
Journal:  Protein Sci       Date:  2006-03-07       Impact factor: 6.725

3.  Computational redesign of the lipid-facing surface of the outer membrane protein OmpA.

Authors:  James A Stapleton; Timothy A Whitehead; Vikas Nanda
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-21       Impact factor: 11.205

4.  Packing of apolar side chains enables accurate design of highly stable membrane proteins.

Authors:  Marco Mravic; Jessica L Thomaston; Maxwell Tucker; Paige E Solomon; Lijun Liu; William F DeGrado
Journal:  Science       Date:  2019-03-29       Impact factor: 47.728

5.  Dynamic Lipid-dependent Modulation of Protein Topology by Post-translational Phosphorylation.

Authors:  Heidi Vitrac; David M MacLean; Anja Karlstaedt; Heinrich Taegtmeyer; Vasanthi Jayaraman; Mikhail Bogdanov; William Dowhan
Journal:  J Biol Chem       Date:  2016-12-14       Impact factor: 5.157

Review 6.  Computational design of membrane proteins.

Authors:  Jose Manuel Perez-Aguilar; Jeffery G Saven
Journal:  Structure       Date:  2012-01-11       Impact factor: 5.006

7.  Accurate computational design of multipass transmembrane proteins.

Authors:  Peilong Lu; Duyoung Min; Frank DiMaio; Kathy Y Wei; Michael D Vahey; Scott E Boyken; Zibo Chen; Jorge A Fallas; George Ueda; William Sheffler; Vikram Khipple Mulligan; Wenqing Xu; James U Bowie; David Baker
Journal:  Science       Date:  2018-03-02       Impact factor: 47.728

8.  Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis.

Authors:  David Drew; Dan Sjöstrand; Johan Nilsson; Thomas Urbig; Chen-ni Chin; Jan-Willem de Gier; Gunnar von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

Review 9.  De novo protein design, a retrospective.

Authors:  Ivan V Korendovych; William F DeGrado
Journal:  Q Rev Biophys       Date:  2020-02-11       Impact factor: 5.318

10.  Experimentally based topology models for E. coli inner membrane proteins.

Authors:  Mikaela Rapp; David Drew; Daniel O Daley; Johan Nilsson; Tiago Carvalho; Karin Melén; Jan-Willem De Gier; Gunnar Von Heijne
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

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