Literature DB >> 7731957

Simple tandem DNA repeats and human genetic disease.

G R Sutherland1, R I Richards.   

Abstract

The human genome contains many repeated DNA sequences that vary in complexity of repeating unit from a single nucleotide to a whole gene. The repeat sequences can be widely dispersed or in simple tandem arrays. Arrays of up to 5 or 6 nt are known as simple tandem repeats, and these are widely dispersed and highly polymorphic. Members of one group of the simple tandem repeats, the trinucleotide repeats, can undergo an increase in copy number by a process of dynamic mutation. Dynamic mutations of the CCG trinucleotide give rise to one group of fragile sites on human chromosomes, the rare folate-sensitive group. One member of this group, the fragile X (FRAXA) is responsible for the most common familial form of mental retardation. Another member of the group FRAXE is responsible for a rarer mild form of mental retardation. Similar mutations of AGC repeats give rise to a number of neurological disorders. The expanded repeats are unstable between generations and somatically. The intergenerational instability gives rise to unusual patterns of inheritance--particularly anticipation, the increasing severity and/or earlier age of onset of the disorder in successive generations. Dynamic mutations have been found only in the human species, and possible reasons for this are considered. The mechanism of dynamic mutation is discussed, and a number of observations of simple tandem repeat mutation that could assist in understanding this phenomenon are commented on.

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Year:  1995        PMID: 7731957      PMCID: PMC42017          DOI: 10.1073/pnas.92.9.3636

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  80 in total

1.  Simple repeat DNA is not replicated simply.

Authors:  R I Richards; G R Sutherland
Journal:  Nat Genet       Date:  1994-02       Impact factor: 38.330

2.  Frequency and stability of the fragile X premutation.

Authors:  A L Reiss; H H Kazazian; C M Krebs; A McAughan; C D Boehm; M T Abrams; D L Nelson
Journal:  Hum Mol Genet       Date:  1994-03       Impact factor: 6.150

3.  Sex and trinucleotide repeats.

Authors:  E M Eicher
Journal:  Nat Genet       Date:  1994-03       Impact factor: 38.330

4.  Implications of FRA16A structure for the mechanism of chromosomal fragile site genesis.

Authors:  J K Nancarrow; E Kremer; K Holman; H Eyre; N A Doggett; D Le Paslier; D F Callen; G R Sutherland; R I Richards
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

5.  Glutamine repeats as polar zippers: their possible role in inherited neurodegenerative diseases.

Authors:  M F Perutz; T Johnson; M Suzuki; J T Finch
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-07       Impact factor: 11.205

6.  Confirmation of the SCA-2 locus as an alternative locus for dominantly inherited spinocerebellar ataxias and refinement of the candidate region.

Authors:  I Lopes-Cendes; E Andermann; E Attig; F Cendes; S Bosch; M Wagner; F Gerstenbrand; F Andermann; G A Rouleau
Journal:  Am J Hum Genet       Date:  1994-05       Impact factor: 11.025

7.  Sequence of the murine Huntington disease gene: evidence for conservation, alternate splicing and polymorphism in a triplet (CCG) repeat [corrected].

Authors:  B Lin; J Nasir; H MacDonald; G Hutchinson; R K Graham; J M Rommens; M R Hayden
Journal:  Hum Mol Genet       Date:  1994-01       Impact factor: 6.150

8.  Polymorphism of a CAG trinucleotide repeat within Sry correlates with B6.YDom sex reversal.

Authors:  P Coward; K Nagai; D Chen; H D Thomas; C M Nagamine; Y F Lau
Journal:  Nat Genet       Date:  1994-03       Impact factor: 38.330

9.  Genomic instability in repeated sequences is an early somatic event in colorectal tumorigenesis that persists after transformation.

Authors:  D Shibata; M A Peinado; Y Ionov; S Malkhosyan; M Perucho
Journal:  Nat Genet       Date:  1994-03       Impact factor: 38.330

10.  Cryptic and polar variation of the fragile X repeat could result in predisposing normal alleles.

Authors:  C B Kunst; S T Warren
Journal:  Cell       Date:  1994-06-17       Impact factor: 41.582

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  65 in total

1.  Long inverted repeats are an at-risk motif for recombination in mammalian cells.

Authors:  A S Waldman; H Tran; E C Goldsmith; M A Resnick
Journal:  Genetics       Date:  1999-12       Impact factor: 4.562

2.  Mutation patterns at dinucleotide microsatellite loci in humans.

Authors:  Qing-Yang Huang; Fu-Hua Xu; Hui Shen; Hong-Yi Deng; Yong-Jun Liu; Yao-Zhong Liu; Jin-Long Li; Robert R Recker; Hong-Wen Deng
Journal:  Am J Hum Genet       Date:  2002-01-15       Impact factor: 11.025

3.  Non-Mendelian transmission at the Machado-Joseph disease locus in normal females: preferential transmission of alleles with smaller CAG repeats.

Authors:  D C Rubinsztein; J Leggo
Journal:  J Med Genet       Date:  1997-03       Impact factor: 6.318

4.  Transcription increases the deletion frequency of long CTG.CAG triplet repeats from plasmids in Escherichia coli.

Authors:  R P Bowater; A Jaworski; J E Larson; P Parniewski; R D Wells
Journal:  Nucleic Acids Res       Date:  1997-07-15       Impact factor: 16.971

5.  Discretized Gaussian mixture for genotyping of microsatellite loci containing homopolymer runs.

Authors:  Hongseok Tae; Dong-Yun Kim; John McCormick; Robert E Settlage; Harold R Garner
Journal:  Bioinformatics       Date:  2013-10-17       Impact factor: 6.937

6.  Anticipation or ascertainment bias in schizophrenia? Penrose's familial mental illness sample.

Authors:  A S Bassett; J Husted
Journal:  Am J Hum Genet       Date:  1997-03       Impact factor: 11.025

7.  Anticipation in familial leukemia.

Authors:  M Horwitz; E L Goode; G P Jarvik
Journal:  Am J Hum Genet       Date:  1996-11       Impact factor: 11.025

8.  Cloned human FMR1 trinucleotide repeats exhibit a length- and orientation-dependent instability suggestive of in vivo lagging strand secondary structure.

Authors:  M C Hirst; P J White
Journal:  Nucleic Acids Res       Date:  1998-05-15       Impact factor: 16.971

9.  Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development.

Authors:  S Karlin; C Burge
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

10.  Prenatal diagnosis of Machado-Joseph disease/Spinocerebellar Ataxia Type 3 in Taiwan: early detection of expanded ataxin-3.

Authors:  Hui-Fang Tsai; Chin-San Liu; Gin-Den Chen; Mei-Ling Lin; Chuan Li; Yi-Yun Chen; Bao-Tyan Wang; Mingli Hsieh
Journal:  J Clin Lab Anal       Date:  2003       Impact factor: 2.352

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