Literature DB >> 7731794

Coding sequence composition flanking either signal element alters V(D)J recombination efficiency.

N V Boubnov1, Z P Wills, D T Weaver.   

Abstract

Lymphoid V(D)J rearrangement is targeted by recombination signal sequences (RSS) bordering V, D or J exons. We demonstrate that the DNA composition of flanking coding positions, particularly poly(A) or poly(T) stretches at one or both RSS, diminishes V(D)J recombination up to 100-fold. Positionally correct cleavages occur in the inhibited reactions, since the junctions formed show the same frequency of precision as uninhibited reactions. Open/shut cleavage/rejoining is not increased at a normal RSS in substrates containing inhibitory A/T homopolymers versus random sequence at a second RSS. Thus recombinase action at both cleavage sites is severely disrupted by modified coding sequences.

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Year:  1995        PMID: 7731794      PMCID: PMC306805          DOI: 10.1093/nar/23.6.1060

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  24 in total

1.  Tn10 insertion specificity is strongly dependent upon sequences immediately adjacent to the target-site consensus sequence.

Authors:  J Bender; N Kleckner
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205

2.  Strand breaks without DNA rearrangement in V (D)J recombination.

Authors:  E A Hendrickson; V F Liu; D T Weaver
Journal:  Mol Cell Biol       Date:  1991-06       Impact factor: 4.272

3.  A V(D)J recombinase-inducible B-cell line: role of transcriptional enhancer elements in directing V(D)J recombination.

Authors:  E M Oltz; F W Alt; W C Lin; J Chen; G Taccioli; S Desiderio; G Rathbun
Journal:  Mol Cell Biol       Date:  1993-10       Impact factor: 4.272

4.  V(D)J recombination coding junction formation without DNA homology: processing of coding termini.

Authors:  N V Boubnov; Z P Wills; D T Weaver
Journal:  Mol Cell Biol       Date:  1993-11       Impact factor: 4.272

5.  Characterization of broken DNA molecules associated with V(D)J recombination.

Authors:  D B Roth; C Zhu; M Gellert
Journal:  Proc Natl Acad Sci U S A       Date:  1993-11-15       Impact factor: 11.205

6.  V(D)J recombination in mammalian cell mutants defective in DNA double-strand break repair.

Authors:  F Pergola; M Z Zdzienicka; M R Lieber
Journal:  Mol Cell Biol       Date:  1993-06       Impact factor: 4.272

7.  Coding end sequence can markedly affect the initiation of V(D)J recombination.

Authors:  R M Gerstein; M R Lieber
Journal:  Genes Dev       Date:  1993-07       Impact factor: 11.361

8.  Mice lacking TdT: mature animals with an immature lymphocyte repertoire.

Authors:  S Gilfillan; A Dierich; M Lemeur; C Benoist; D Mathis
Journal:  Science       Date:  1993-08-27       Impact factor: 47.728

9.  Lack of N regions in antigen receptor variable region genes of TdT-deficient lymphocytes.

Authors:  T Komori; A Okada; V Stewart; F W Alt
Journal:  Science       Date:  1993-08-27       Impact factor: 47.728

10.  Cutting and closing without recombination in V(D)J joining.

Authors:  S M Lewis; J E Hesse
Journal:  EMBO J       Date:  1991-12       Impact factor: 11.598

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  12 in total

1.  Mechanistic basis for coding end sequence effects in the initiation of V(D)J recombination.

Authors:  K Yu; M R Lieber
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

2.  Mechanisms that direct ordered assembly of T cell receptor beta locus V, D, and J gene segments.

Authors:  B P Sleckman; C H Bassing; M M Hughes; A Okada; M D'Auteuil; T D Wehrly; B B Woodman; L Davidson; J Chen; F W Alt
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

3.  Mechanism of fragility at BCL2 gene minor breakpoint cluster region during t(14;18) chromosomal translocation.

Authors:  Mridula Nambiar; Sathees C Raghavan
Journal:  J Biol Chem       Date:  2012-01-24       Impact factor: 5.157

4.  DNA sequence and structure requirements for cleavage of V(D)J recombination signal sequences.

Authors:  C A Cuomo; C L Mundy; M A Oettinger
Journal:  Mol Cell Biol       Date:  1996-10       Impact factor: 4.272

5.  Distinct DNA sequence and structure requirements for the two steps of V(D)J recombination signal cleavage.

Authors:  D A Ramsden; J F McBlane; D C van Gent; M Gellert
Journal:  EMBO J       Date:  1996-06-17       Impact factor: 11.598

6.  V(D)J recombination frequency is affected by the sequence interposed between a pair of recombination signals: sequence comparison reveals a putative recombinational enhancer element.

Authors:  F A Roch; R Hobi; M W Berchtold; C C Kuenzle
Journal:  Nucleic Acids Res       Date:  1997-06-15       Impact factor: 16.971

Review 7.  Genome Topology Control of Antigen Receptor Gene Assembly.

Authors:  Brittney M Allyn; Kyutae D Lee; Craig H Bassing
Journal:  J Immunol       Date:  2020-05-15       Impact factor: 5.422

8.  The composition of coding joints formed in V(D)J recombination is strongly affected by the nucleotide sequence of the coding ends and their relationship to the recombination signal sequences.

Authors:  U R Ezekiel; T Sun; G Bozek; U Storb
Journal:  Mol Cell Biol       Date:  1997-07       Impact factor: 4.272

9.  A RAG1 mutation found in Omenn syndrome causes coding flank hypersensitivity: a novel mechanism for antigen receptor repertoire restriction.

Authors:  Serre-Yu Wong; Catherine P Lu; David B Roth
Journal:  J Immunol       Date:  2008-09-15       Impact factor: 5.422

10.  Initiation of V(D)J recombination by Dbeta-associated recombination signal sequences: a critical control point in TCRbeta gene assembly.

Authors:  Don-Marc Franchini; Touati Benoukraf; Sébastien Jaeger; Pierre Ferrier; Dominique Payet-Bornet
Journal:  PLoS One       Date:  2009-02-24       Impact factor: 3.240

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