Literature DB >> 7730804

Survey of major genotypes and subtypes of hepatitis C virus using RFLP of sequences amplified from the 5' non-coding region.

F Davidson1, P Simmonds, J C Ferguson, L M Jarvis, B C Dow, E A Follett, C R Seed, T Krusius, C Lin, G A Medgyesi.   

Abstract

A method is described for identifying different genotypes of hepatitis C virus (HCV) by restriction endonuclease cleavage of sequences amplified by PCR from the 5' non-coding region. Using the enzymes HaeIII-RsaI and HinfI-MvaI, followed by cleavage with BstU1 or ScrFI, it was possible to identify and distinguish HCV genotypes 1a, 1b, 2a, 2b, 3a, 3b, 4, 5 and 6. The method was used to investigate the prevalence of these genotypes in 723 blood donors in 15 countries, the largest survey to date, and one which covered a wide range of geographical regions (Europe, America, Africa and Asia). These results, combined with a review of the existing literature, indicate the existence of several distinct regional patterns of HCV genotype distribution, and provide the framework for future detailed epidemiological investigations of HCV transmission.

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Year:  1995        PMID: 7730804     DOI: 10.1099/0022-1317-76-5-1197

Source DB:  PubMed          Journal:  J Gen Virol        ISSN: 0022-1317            Impact factor:   3.891


  95 in total

1.  Natural variation in translational activities of the 5' nontranslated RNAs of hepatitis C virus genotypes 1a and 1b: evidence for a long-range RNA-RNA interaction outside of the internal ribosomal entry site.

Authors:  M Honda; R Rijnbrand; G Abell; D Kim; S M Lemon
Journal:  J Virol       Date:  1999-06       Impact factor: 5.103

2.  Distribution of HCV genotypes among risk groups in Serbia.

Authors:  G Stamenkovic; S Zerjav; Z M Velickovic; K Krtolica; V L Samardzija; L Jemuovic; D Nozic; B Dimitrijevic
Journal:  Eur J Epidemiol       Date:  2000       Impact factor: 8.082

Review 3.  Principles and applications of methods for DNA-based typing of microbial organisms.

Authors:  D M Olive; P Bean
Journal:  J Clin Microbiol       Date:  1999-06       Impact factor: 5.948

4.  Hepatitis C infection in an Irish antenatal population.

Authors:  C M Healy; M T Cafferkey; A Conroy; S Dooley; W W Hall; M Beckett; R Mackey; T A Clarke; M J White; W A Gorman; K M Butler
Journal:  Ir J Med Sci       Date:  2000 Jul-Sep       Impact factor: 1.568

5.  Comparison of hepatitis C viral loads in patients with or without coinfection with different genotypes.

Authors:  Alejandro Schijman; Rodney Colina; Sergey Mukomolov; Olga Kalinina; Laura García; Shobha Broor; Ajoy Varma Bhupatiraju; Peter Karayiannis; Baldip Khan; Cristina Mogdasy; Juan Cristina
Journal:  Clin Diagn Lab Immunol       Date:  2004-03

6.  Phylogenetic analysis of previously nontypeable hepatitis C virus isolates from Argentina.

Authors:  María Inés Gismondi; Pablo Daniel Becker; Pamela Valva; Carlos Alberto Guzmán; María Victoria Preciado
Journal:  J Clin Microbiol       Date:  2006-06       Impact factor: 5.948

7.  Interaction between immunoglobulin allotypes and NK receptor genes in diabetes post-hepatitis C virus infection.

Authors:  Julio Granados-Montiel; Joaquin Zúñiga; Jose Azocar; Edmond J Feris; Daniel Terreros; Charles E Larsen; Olga P Clavijo; Alfredo Cruz-Lagunas; Derek Middleton; Chester A Alper; Janardan P Pandey; Edmond J Yunis
Journal:  Immunobiology       Date:  2010-11-05       Impact factor: 3.144

8.  Nested restriction site-specific PCR to detect and type hepatitis C virus (HCV): a rapid method to distinguish HCV subtype 1b from other genotypes.

Authors:  L Krekulova; V Rehak; A E Wakil; E Harris; L W Riley
Journal:  J Clin Microbiol       Date:  2001-05       Impact factor: 5.948

9.  Subtyping genotype 2 hepatitis C viruses from Tunisia: identification of two putative new subtypes.

Authors:  Mouna Rajhi; Selma Mejri; Ahlem Djebbi; Soufiene Chouaieb; Imed Cheikh; Ahlem Ben Yahia; Amel Sadraoui; Walid Hammami; Msaddak Azouz; Nabil Ben Mami; Henda Triki
Journal:  Virus Genes       Date:  2013-11-23       Impact factor: 2.332

10.  Identification of hepatitis C virus (HCV) subtype 1b strains that are highly, or only weakly, associated with hepatocellular carcinoma on the basis of the secondary structure of an amino-terminal portion of the HCV NS3 protein.

Authors:  Satoshi Ogata; Ruth Huab Florese; Motoko Nagano-Fujii; Rachmat Hidajat; Lin Deng; Yonson Ku; Seitetsu Yoon; Takafumi Saito; Sumio Kawata; Hak Hotta
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

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