Literature DB >> 7729929

Bacterial colony counting using distance transform.

D P Mukherjee1, A Pal, S E Sarma, D D Majumder.   

Abstract

A distance-transform based technique is presented for the segmentation of monochrome images of colonies grown on membrane filters. This is used to count the number of Escherichia coli in a given water sample, which is used as a parameter for determining water quality. The result is compared with fuzzy c-means clustering approach.

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Year:  1995        PMID: 7729929     DOI: 10.1016/0020-7101(94)01043-z

Source DB:  PubMed          Journal:  Int J Biomed Comput        ISSN: 0020-7101


  7 in total

1.  Cell colony counter called CoCoNut.

Authors:  Mattia Siragusa; Stefano Dall'Olio; Pil M Fredericia; Mikael Jensen; Torsten Groesser
Journal:  PLoS One       Date:  2018-11-07       Impact factor: 3.240

2.  COVASIAM: an image analysis method that allows detection of confluent microbial colonies and colonies of various sizes for automated counting.

Authors:  G Corkidi; R Diaz-Uribe; J L Folch-Mallol; J Nieto-Sotelo
Journal:  Appl Environ Microbiol       Date:  1998-04       Impact factor: 4.792

3.  A comprehensive review of image analysis methods for microorganism counting: from classical image processing to deep learning approaches.

Authors:  Jiawei Zhang; Chen Li; Md Mamunur Rahaman; Yudong Yao; Pingli Ma; Jinghua Zhang; Xin Zhao; Tao Jiang; Marcin Grzegorzek
Journal:  Artif Intell Rev       Date:  2021-09-29       Impact factor: 9.588

4.  Counting colonies of clonogenic assays by using densitometric software.

Authors:  Maximilian Niyazi; Ismat Niyazi; Claus Belka
Journal:  Radiat Oncol       Date:  2007-01-09       Impact factor: 3.481

5.  Real-time bacterial microcolony counting using on-chip microscopy.

Authors:  Jae Hee Jung; Jung Eun Lee
Journal:  Sci Rep       Date:  2016-02-23       Impact factor: 4.379

6.  Portable bacterial identification system based on elastic light scatter patterns.

Authors:  Euiwon Bae; Dawei Ying; Donald Kramer; Valery Patsekin; Bartek Rajwa; Cheryl Holdman; Jennifer Sturgis; V Jo Davisson; J Paul Robinson
Journal:  J Biol Eng       Date:  2012-08-28       Impact factor: 4.355

7.  OpenCFU, a new free and open-source software to count cell colonies and other circular objects.

Authors:  Quentin Geissmann
Journal:  PLoS One       Date:  2013-02-15       Impact factor: 3.240

  7 in total

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