Literature DB >> 7719855

The lipoamide arm in the glycine decarboxylase complex is not freely swinging.

C Cohen-Addad1, S Pares, L Sieker, M Neuburger, R Douce.   

Abstract

Glycine decarboxylase consists of four protein components. Its structural and mechanistic heart is provided by the lipoic acid-containing H-protein which undergoes a cycle of reductive methylamination, methylamine transfer and electron transfer. Lipoic acid attached to a specific lysine side chain is assumed to act as a 'swinging arm' conveying the reactive dithiolane ring from one catalytic centre to another. The X-ray crystal structures of two forms of the H-protein have been determined. The lipoate cofactor is located in the loop of a hairpin configuration but following methylamine transfer it is pivoted to bind into a cleft at the surface of the H-protein. The lipoamide-methylamine arm is, therefore, not free to move in aqueous solvent.

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Year:  1995        PMID: 7719855     DOI: 10.1038/nsb0195-63

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  8 in total

Review 1.  The role of plant mitochondria in the biosynthesis of coenzymes.

Authors:  Fabrice Rébeillé; Claude Alban; Jacques Bourguignon; Stéphane Ravanel; Roland Douce
Journal:  Photosynth Res       Date:  2007-04-27       Impact factor: 3.573

2.  Classification of ligand molecules in PDB with graph match-based structural superposition.

Authors:  Clara Shionyu-Mitsuyama; Atsushi Hijikata; Toshiyuki Tsuji; Tsuyoshi Shirai
Journal:  J Struct Funct Genomics       Date:  2016-12-23

3.  Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia.

Authors:  Tadashi Nakai; Noriko Nakagawa; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Journal:  EMBO J       Date:  2005-03-24       Impact factor: 11.598

4.  Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism.

Authors:  Kazuko Okamura-Ikeda; Harumi Hosaka; Nobuo Maita; Kazuko Fujiwara; Akiyasu C Yoshizawa; Atsushi Nakagawa; Hisaaki Taniguchi
Journal:  J Biol Chem       Date:  2010-04-06       Impact factor: 5.157

5.  Structure and selectivity in post-translational modification: attaching the biotinyl-lysine and lipoyl-lysine swinging arms in multifunctional enzymes.

Authors:  P Reche; R N Perham
Journal:  EMBO J       Date:  1999-05-17       Impact factor: 11.598

6.  Structure of a putative lipoate protein ligase from Thermoplasma acidophilum and the mechanism of target selection for post-translational modification.

Authors:  Edward McManus; Ben F Luisi; Richard N Perham
Journal:  J Mol Biol       Date:  2005-12-05       Impact factor: 5.469

Review 7.  Assembly of Lipoic Acid on Its Cognate Enzymes: an Extraordinary and Essential Biosynthetic Pathway.

Authors:  John E Cronan
Journal:  Microbiol Mol Biol Rev       Date:  2016-04-13       Impact factor: 11.056

8.  Structure-based dynamic analysis of the glycine cleavage system suggests key residues for control of a key reaction step.

Authors:  Han Zhang; Yuchen Li; Jinglei Nie; Jie Ren; An-Ping Zeng
Journal:  Commun Biol       Date:  2020-12-11
  8 in total

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