Literature DB >> 7717967

Wild-type and mutant D-xylose isomerase from Actinoplanes missouriensis: metal-ion dissociation constants, kinetic parameters of deuterated and non-deuterated substrates and solvent-isotope effects.

P B van Bastelaere1, H L Kersters-Hilderson, A M Lambeir.   

Abstract

The metal-ion dissociation constants (Mg2+, Mn2+) of wild-type and mutant D-xylose isomerases from Actinoplanes missouriensis have been determined by titrating the metal-ion-free enzymes with Mg2+ and Mn2+ respectively. Substitution of amino acids co-ordinated to metal-ion 1 (E181D, D245N) dramatically affects the dissociation constants, pH-activity profiles and apparent substrate binding. Mutagenesis of groups ligated to metal-ion 2 is less drastic except for that of Asp-255: a decrease in metal-ion affinity, a change in metal-ion preference and an improved apparent substrate binding (at pH values above the optimum), especially in the presence of Mn2+, are observed for the D255N enzyme. Similar effects, except for a slightly increased metal-ion affinity, are obtained by mutagenesis of the adjacent Glu-186 to Gln and the unconserved Ala-25 to Lys. Moreover, the striking acidic-pH shifts observed for the D255N and E186Q enzymes support the crucial role of the water molecule, Wa-690, Asp-255 and the adjacent Glu-186 in proton transfer from 2-OH to O-1 of the open and extended aldose substrate. Mutations of other important groups scarcely affect the metal-ion dissociation constants and pH-activity profiles, although pronounced effects on the kinetic parameters may be observed.

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Year:  1995        PMID: 7717967      PMCID: PMC1136755          DOI: 10.1042/bj3070135

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  19 in total

1.  Mechanism for aldose-ketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift.

Authors:  C A Collyer; K Henrick; D M Blow
Journal:  J Mol Biol       Date:  1990-03-05       Impact factor: 5.469

2.  X-ray analysis of D-xylose isomerase at 1.9 A: native enzyme in complex with substrate and with a mechanism-designed inactivator.

Authors:  H L Carrell; J P Glusker; V Burger; F Manfre; D Tritsch; J F Biellmann
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

3.  Structural analysis of the 2.8 A model of Xylose isomerase from Actinoplanes missouriensis.

Authors:  F Rey; J Jenkins; J Janin; I Lasters; P Alard; M Claessens; G Matthyssens; S Wodak
Journal:  Proteins       Date:  1988

4.  Purification, crystallization and properties of the D-xylose isomerase from Lactobacillus brevis.

Authors:  K Yamanaka
Journal:  Biochim Biophys Acta       Date:  1968-03-25

5.  Catalytic mechanism of xylose (glucose) isomerase from Clostridium thermosulfurogenes. Characterization of the structural gene and function of active site histidine.

Authors:  C Y Lee; M Bagdasarian; M H Meng; J G Zeikus
Journal:  J Biol Chem       Date:  1990-11-05       Impact factor: 5.157

6.  Properties of D-xylose isomerase from Streptomyces albus.

Authors:  S Sanchez; K L Smiley
Journal:  Appl Microbiol       Date:  1975-06

7.  Metal ion binding to D-xylose isomerase from Streptomyces violaceoruber.

Authors:  M Callens; P Tomme; H Kersters-Hilderson; R Cornelis; W Vangrysperre; C K De Bruyne
Journal:  Biochem J       Date:  1988-02-15       Impact factor: 3.857

8.  A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 A Streptomyces rubiginosus structures with xylitol and D-xylose.

Authors:  M Whitlow; A J Howard; B C Finzel; T L Poulos; E Winborne; G L Gilliland
Journal:  Proteins       Date:  1991

9.  Crystallographic studies of the mechanism of xylose isomerase.

Authors:  G K Farber; A Glasfeld; G Tiraby; D Ringe; G A Petsko
Journal:  Biochemistry       Date:  1989-09-05       Impact factor: 3.162

10.  Structures of D-xylose isomerase from Arthrobacter strain B3728 containing the inhibitors xylitol and D-sorbitol at 2.5 A and 2.3 A resolution, respectively.

Authors:  K Henrick; C A Collyer; D M Blow
Journal:  J Mol Biol       Date:  1989-07-05       Impact factor: 5.469

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  6 in total

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Authors:  Mireia Garcia-Viloca; Tina D Poulsen; Donald G Truhlar; Jiali Gao
Journal:  Protein Sci       Date:  2004-09       Impact factor: 6.725

2.  Production, purification and physicochemical characterization of D-xylose/glucose isomerase from Escherichia coli strain BL21.

Authors:  Bilqees Fatima; Muhammad Mohsin Javed
Journal:  3 Biotech       Date:  2020-01-09       Impact factor: 2.406

3.  Binding energy and catalysis by D-xylose isomerase: kinetic, product, and X-ray crystallographic analysis of enzyme-catalyzed isomerization of (R)-glyceraldehyde.

Authors:  Maria M Toteva; Nicholas R Silvaggi; Karen N Allen; John P Richard
Journal:  Biochemistry       Date:  2011-10-27       Impact factor: 3.162

Review 4.  Molecular and industrial aspects of glucose isomerase.

Authors:  S H Bhosale; M B Rao; V V Deshpande
Journal:  Microbiol Rev       Date:  1996-06

5.  Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography.

Authors:  Misun Lee; Henriëtte J Rozeboom; Paul P de Waal; Rene M de Jong; Hanna M Dudek; Dick B Janssen
Journal:  Biochemistry       Date:  2017-11-02       Impact factor: 3.162

6.  Structure-based directed evolution improves S. cerevisiae growth on xylose by influencing in vivo enzyme performance.

Authors:  Misun Lee; Henriëtte J Rozeboom; Eline Keuning; Paul de Waal; Dick B Janssen
Journal:  Biotechnol Biofuels       Date:  2020-01-11       Impact factor: 6.040

  6 in total

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