Literature DB >> 7711255

Characterization of enzyme-bound ligand dynamics by solid-state NMR in the presence of ligand exchange: L-phenylalanine on carboxypeptidase A.

H Zhang1, R G Bryant.   

Abstract

Deuterium NMR spectra were obtained for L-phenylalanine-d5, deuterated on the phenyl ring, in cross-linked polycrystalline samples of carboxypeptidase A containing different amounts of water. The deuterium powder pattern line shapes are simulated by extension of the theory to include both a local reorientational motion of the bound L-phenylalanine phenyl ring and exchange of the L-phenylalanine with an intracrystalline isotropic environment. The spectral simulations are consistent with the phenyl ring of the phenylalanine executing pi-flips in the bound environment at rates that vary from 3 x 10(4) Hz at 6% water content to 1 x 10(5) Hz at 21% water content. At all water contents studied, the ligand exchanges with an essentially isotropic environment in the crystal with a rate constant of approximately 2.5 x 10(-3) Hz. Although the dissociation constant for the L-phenylalanine is only 18 mM, the spectral simulations that reproduce the experimental line shape well do not require significant wobble of the phenyl ring rotation axis, which is consistent with the binding interactions identified by x-ray crystallography.

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Year:  1995        PMID: 7711255      PMCID: PMC1281688          DOI: 10.1016/S0006-3495(95)80188-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

1.  Solid-state NMR assessment of enzyme active center structure under nonaqueous conditions.

Authors:  P A Burke; R G Griffin; A M Klibanov
Journal:  J Biol Chem       Date:  1992-10-05       Impact factor: 5.157

2.  Binding of a possible transition state analogue to the active site of carboxypeptidase A.

Authors:  D W Christianson; W N Lipscomb
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

Review 3.  Protein structure by solid-state NMR spectroscopy.

Authors:  S J Opella; P L Stewart; K G Valentine
Journal:  Q Rev Biophys       Date:  1987-02       Impact factor: 5.318

4.  13C NMR studies of D- and L-phenylalanine binding to cobalt(II) carboxypeptidase A.

Authors:  C Luchinat; R Monnanni; S Roelens; B L Vallee; D S Auld
Journal:  J Inorg Biochem       Date:  1988-01       Impact factor: 4.155

5.  13C NMR studies of carboxylate inhibitor binding to cobalt(II) carboxypeptidase A.

Authors:  I Bertini; R Monnanni; G C Pellacani; M Sola; B L Vallee; D S Auld
Journal:  J Inorg Biochem       Date:  1988-01       Impact factor: 4.155

Review 6.  Solid state NMR studies of protein internal dynamics.

Authors:  D A Torchia
Journal:  Annu Rev Biophys Bioeng       Date:  1984

7.  Solid state nuclear magnetic resonance of lipid bilayers.

Authors:  R G Griffin
Journal:  Methods Enzymol       Date:  1981       Impact factor: 1.600

8.  Refined crystal structure of carboxypeptidase A at 1.54 A resolution.

Authors:  D C Rees; M Lewis; W N Lipscomb
Journal:  J Mol Biol       Date:  1983-08-05       Impact factor: 5.469

9.  Kinetic analysis by stopped-flow radiationless energy transfer studies: effect of anions on the activity of carboxypeptidase A.

Authors:  A C Williams; D S Auld
Journal:  Biochemistry       Date:  1986-01-14       Impact factor: 3.162

10.  Zinc environment and cis peptide bonds in carboxypeptidase A at 1.75-A resolution.

Authors:  D C Rees; M Lewis; R B Honzatko; W N Lipscomb; K D Hardman
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

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  3 in total

1.  Bound ligand motion in crystalline carboxypeptidase A.

Authors:  H Zhang; R G Bryant
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

2.  Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-09-10       Impact factor: 2.991

3.  Dynamics of Hydrophobic Core Phenylalanine Residues Probed by Solid-State Deuteron NMR.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Toni Villafranca; Janelle Sharp; Wei Xu; Andrew S Lipton; Gina L Hoatson; Robert L Vold
Journal:  J Phys Chem B       Date:  2015-11-12       Impact factor: 2.991

  3 in total

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