Literature DB >> 7710091

Analysis of equilibrium binding data obtained by linear-response spectroscopic techniques.

D Toptygin1, L Brand.   

Abstract

A new computational approach for the analysis of equilibrium binding data obtained by spectroscopic methods is described. The approach is aimed at systems involving multiple interactions, where the changes in the spectroscopic signal cannot be attributed to a single interaction. A family of absorption or fluorescence spectra or decay curves obtained in a course of multiple titrations can be decomposed into basic components in an infinite variety of different ways. Model equilibrium equations are used as constraints to determine the basic components associated with the actual chemical species and the concentrations of these species. No assumption is made regarding the parametric form of the component spectra or decays. Binding constants are evaluated simultaneously with the resolved spectra and/or decays in a nonlinear least-square procedure. A key benefit of the method presented is the reduction in the number of fitting parameters. The conditions necessary and sufficient for the existence of a unique solution are considered. The application of the method is demonstrated with experimental data involving titrations of horse liver alcohol dehydrogenase with NADH and isobutyramide.

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Year:  1995        PMID: 7710091     DOI: 10.1006/abio.1995.1048

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  5 in total

1.  Swapping single-stranded DNA sequence specificities of relaxases from conjugative plasmids F and R100.

Authors:  Matthew J Harley; Joel F Schildbach
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-22       Impact factor: 11.205

Review 2.  Using fluorophore-labeled oligonucleotides to measure affinities of protein-DNA interactions.

Authors:  Brian J Anderson; Chris Larkin; Kip Guja; Joel F Schildbach
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

3.  Formation of pH and potential gradients by the reconstituted Azotobacter vinelandii cytochrome bd respiratory protection oxidase.

Authors:  J F Kolonay; R J Maier
Journal:  J Bacteriol       Date:  1997-06       Impact factor: 3.490

4.  A simple model-free method for direct assessment of fluorescent ligand binding by linear spectral summation.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  J Fluoresc       Date:  2013-09-18       Impact factor: 2.217

5.  Examination of an inverted repeat within the F factor origin of transfer: context dependence of F TraI relaxase DNA specificity.

Authors:  Sarah L Williams; Joel F Schildbach
Journal:  Nucleic Acids Res       Date:  2006-01-17       Impact factor: 16.971

  5 in total

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