Literature DB >> 7704666

The genetic data environment an expandable GUI for multiple sequence analysis.

S W Smith1, R Overbeek, C R Woese, W Gilbert, P M Gillevet.   

Abstract

An X-Windows-based graphic user interface is presented which allows the seamless integration of numerous existing biomolecular programs into a single analysis environment. This environment is based on a core multiple sequence editor that is linked to external programs by a user-expandable menu system and is supported on Sun and DEC workstations. There is no limitation to the number of external functions that can be linked to the interface. The length and number of sequences that can be handled are limited only by the size of virtual memory present on the workstation. The sequence data itself is used as the reference point from which analysis is done, and scalable graphic views are supported. It is suggested that future software development utilizing this expandable, user-defined menu system and the I/O linkage of external programs will allow biologists to easily integrate expertise from disparate fields into a single environment.

Mesh:

Year:  1994        PMID: 7704666     DOI: 10.1093/bioinformatics/10.6.671

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  123 in total

1.  A phylogeny of the land snails (Gastropoda: Pulmonata).

Authors:  C M Wade; P B Mordan; B Clarke
Journal:  Proc Biol Sci       Date:  2001-02-22       Impact factor: 5.349

2.  The signature of balancing selection: fungal mating compatibility gene evolution.

Authors:  G May; F Shaw; H Badrane; X Vekemans
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

3.  Evolutionary origin, diversification and specialization of eukaryotic MutS homolog mismatch repair proteins.

Authors:  K M Culligan; G Meyer-Gauen; J Lyons-Weiler; J B Hays
Journal:  Nucleic Acids Res       Date:  2000-01-15       Impact factor: 16.971

4.  Long-distance colonization and radiation in gekkonid lizards, Tarentola (Reptilia: Gekkonidae), revealed by mitochondrial DNA sequences.

Authors:  S Carranza; E N Arnold; J A Mateo; L F López-Jurado
Journal:  Proc Biol Sci       Date:  2000-04-07       Impact factor: 5.349

5.  Phylogenetic analysis of arthropods using two nuclear protein-encoding genes supports a crustacean + hexapod clade.

Authors:  J W Shultz; J C Regier
Journal:  Proc Biol Sci       Date:  2000-05-22       Impact factor: 5.349

6.  The mitochondrial genome of the stramenopile alga Chrysodidymus synuroideus. Complete sequence, gene content and genome organization.

Authors:  J M Chesnick; M Goff; J Graham; C Ocampo; B F Lang; E Seif; G Burger
Journal:  Nucleic Acids Res       Date:  2000-07-01       Impact factor: 16.971

7.  Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences.

Authors:  Gabrielle Rocap; Daniel L Distel; John B Waterbury; Sallie W Chisholm
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

8.  Analysis of intergenic spacer transcripts suggests 'read-around' transcription of the extrachromosomal circular rDNA in Euglena gracilis.

Authors:  S J Greenwood; M N Schnare; J R Cook; M W Gray
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

9.  Kinetics of perchlorate- and chlorate-respiring bacteria.

Authors:  B E Logan; H Zhang; P Mulvaney; M G Milner; I M Head; R F Unz
Journal:  Appl Environ Microbiol       Date:  2001-06       Impact factor: 4.792

10.  Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments.

Authors:  D J Scala; L J Kerkhof
Journal:  Appl Environ Microbiol       Date:  1999-04       Impact factor: 4.792

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