Literature DB >> 7694034

Solution of the ribosome riddle: how the ribosome selects the correct aminoacyl-tRNA out of 41 similar contestants.

K H Nierhaus1.   

Abstract

Three tRNA binding sites, the A, P and E sites, have been demonstrated on ribosomes of bacterial, archaebacterial and eukaryotic origin. In all these cases the first and the third site, the A and the E site, are allosterically coupled in the sense of a negative co-operativity. Therefore, the allosteric three-site model seems to be a generally valid description of the ribosomal elongation phase, where in a cycle of reactions the nascent peptide chain is prolonged by one amino acid. The molecular concept of the allosteric three-site model explains the astonishing ability of the ribosome to select the correct substrate out of a large number of very similar substrates, and it provides a framework within which the mechanisms of the elongation factors could be understood.

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Year:  1993        PMID: 7694034     DOI: 10.1111/j.1365-2958.1993.tb01726.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  14 in total

1.  Analysis of codon:anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure.

Authors:  V I Lim; J F Curran
Journal:  RNA       Date:  2001-07       Impact factor: 4.942

2.  Evidence that the bypassing ribosome travels through the coding gap.

Authors:  Jonathan Gallant; Paul Bonthuis; Dale Lindsley
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-23       Impact factor: 11.205

3.  Shine-Dalgarno interaction prevents incorporation of noncognate amino acids at the codon following the AUG.

Authors:  Viviana Di Giacco; Viter Márquez; Yan Qin; Markus Pech; Francisco J Triana-Alonso; Daniel N Wilson; Knud H Nierhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-30       Impact factor: 11.205

4.  Escherichia coli release factor 3: resolving the paradox of a typical G protein structure and atypical function with guanine nucleotides.

Authors:  H J Pel; J G Moffat; K Ito; Y Nakamura; W P Tate
Journal:  RNA       Date:  1998-01       Impact factor: 4.942

5.  Are the current three-site models valid descriptions of the ribosomal elongation cycle?

Authors:  K H Nierhaus; R Jünemann; C M Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-30       Impact factor: 11.205

Review 6.  Throwing a spanner in the works: antibiotics and the translation apparatus.

Authors:  C M Spahn; C D Prescott
Journal:  J Mol Med (Berl)       Date:  1996-08       Impact factor: 4.599

7.  Orientations of transfer RNA in the ribosomal A and P sites.

Authors:  T R Easterwood; F Major; A Malhotra; S C Harvey
Journal:  Nucleic Acids Res       Date:  1994-09-11       Impact factor: 16.971

Review 8.  Posttranscriptional control of gene expression in yeast.

Authors:  J E McCarthy
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

9.  Translation elongation factor-3 (EF-3): an evolving eukaryotic ribosomal protein?

Authors:  G P Belfield; N J Ross-Smith; M F Tuite
Journal:  J Mol Evol       Date:  1995-09       Impact factor: 2.395

10.  Interaction of tRNAs with the ribosome at the A and P sites.

Authors:  M Dabrowski; C M Spahn; K H Nierhaus
Journal:  EMBO J       Date:  1995-10-02       Impact factor: 11.598

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