Literature DB >> 7688114

Promoter opening (melting) and transcription initiation by RNA polymerase I requires neither nucleotide beta,gamma hydrolysis nor protein phosphorylation.

A K Lofquist1, H Li, M A Imboden, M R Paule.   

Abstract

With some bacterial RNA polymerases and in eukaryotic RNA polymerase II, DNA melting during initiation requires the coupling of energy derived from beta,gamma hydrolysis of ATP. A detailed analysis of this possible requirement for eukaryotic RNA polymerase I reveals no such requirement. However, in some cases, beta,gamma non-hydrolyzable derivatives (beta,gamma imido or methylene) of nucleotide substrates have been found to significantly inhibit transcription initiation because of their inefficient use as the first nucleotide of the transcript. In addition, the results presented here show that protein kinase activity is not required as an integral part of transcription initiation by RNA polymerase I. Prior phosphorylation of proteins participating in the process is not ruled out.

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Year:  1993        PMID: 7688114      PMCID: PMC309760          DOI: 10.1093/nar/21.14.3233

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

1.  Purification of components required for accurate transcription of ribosomal RNA from Acanthamoeba castellanii.

Authors:  C T Iida; M R Paule
Journal:  Nucleic Acids Res       Date:  1992-06-25       Impact factor: 16.971

2.  A transcriptional enhancer whose function imposes a requirement that proteins track along DNA.

Authors:  D R Herendeen; G A Kassavetis; E P Geiduschek
Journal:  Science       Date:  1992-05-29       Impact factor: 47.728

Review 3.  Prokaryotic transcriptional enhancers and enhancer-binding proteins.

Authors:  S Kustu; A K North; D S Weiss
Journal:  Trends Biochem Sci       Date:  1991-11       Impact factor: 13.807

4.  Kinetic analysis of ribonucleic acid chain initiation by Escherichia coli Ribonucleic acid polymerase bound to DNA.

Authors:  G Rhodes; M J Chamberlin
Journal:  J Biol Chem       Date:  1975-12-10       Impact factor: 5.157

5.  A rapid and facile procedure for the preparation of RNA polymerase I from Acanthamoeba castellanii. Purification and subunit structure.

Authors:  S R Spindler; G L Duester; J M D'Alessio; M R Paule
Journal:  J Biol Chem       Date:  1978-07-10       Impact factor: 5.157

6.  The start site of the Acanthamoeba castellanii ribosomal RNA transcription unit.

Authors:  P J Perna; G H Harris; C T Iida; P Kownin; S Bugren; M R Paule
Journal:  Gene Expr       Date:  1992

7.  Formation of open and elongating transcription complexes by RNA polymerase III.

Authors:  G A Kassavetis; J A Blanco; T E Johnson; E P Geiduschek
Journal:  J Mol Biol       Date:  1992-07-05       Impact factor: 5.469

8.  In vitro transcription of human ribosomal RNA genes by RNA polymerase I.

Authors:  R M Learned; R Tjian
Journal:  J Mol Appl Genet       Date:  1982

9.  Polymerase II promoter activation: closed complex formation and ATP-driven start site opening.

Authors:  W Wang; M Carey; J D Gralla
Journal:  Science       Date:  1992-01-24       Impact factor: 47.728

10.  The interaction of RNA polymerase II with the adenovirus-2 major late promoter is precluded by phosphorylation of the C-terminal domain of subunit IIa.

Authors:  J D Chesnut; J H Stephens; M E Dahmus
Journal:  J Biol Chem       Date:  1992-05-25       Impact factor: 5.157

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  10 in total

Review 1.  Survey and summary: transcription by RNA polymerases I and III.

Authors:  M R Paule; R J White
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

2.  RNA polymerase I holoenzyme-promoter complexes include an associated CK2-like protein kinase.

Authors:  J Saez-Vasquez; M Meissner; C S Pikaard
Journal:  Plant Mol Biol       Date:  2001-10       Impact factor: 4.076

3.  Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control.

Authors:  Y Guo; C M Lew; J D Gralla
Journal:  Genes Dev       Date:  2000-09-01       Impact factor: 11.361

4.  Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH.

Authors:  F C Holstege; P C van der Vliet; H T Timmers
Journal:  EMBO J       Date:  1996-04-01       Impact factor: 11.598

5.  A novel RNA polymerase I transcription initiation factor, TIF-IE, commits rRNA genes by interaction with TIF-IB, not by DNA binding.

Authors:  Anna Maria Al-Khouri; Marvin R Paule
Journal:  Mol Cell Biol       Date:  2002-02       Impact factor: 4.272

6.  Histone acetyltransferase and protein kinase activities copurify with a putative Xenopus RNA polymerase I holoenzyme self-sufficient for promoter-dependent transcription.

Authors:  A C Albert; M Denton; M Kermekchiev; C S Pikaard
Journal:  Mol Cell Biol       Date:  1999-01       Impact factor: 4.272

7.  Identification of two steps during Xenopus ribosomal gene transcription that are sensitive to protein phosphorylation.

Authors:  P Labhart
Journal:  Mol Cell Biol       Date:  1994-03       Impact factor: 4.272

8.  Structural mechanism of ATP-independent transcription initiation by RNA polymerase I.

Authors:  Yan Han; Chunli Yan; Thi Hoang Duong Nguyen; Ashleigh J Jackobel; Ivaylo Ivanov; Bruce A Knutson; Yuan He
Journal:  Elife       Date:  2017-06-17       Impact factor: 8.140

Review 9.  Breaking the mold: structures of the RNA polymerase I transcription complex reveal a new path for initiation.

Authors:  Ashleigh J Jackobel; Yan Han; Yuan He; Bruce A Knutson
Journal:  Transcription       Date:  2018-01-15

10.  Transcription initiation by RNA polymerase II does not require hydrolysis of the beta-gamma phosphoanhydride bond of ATP.

Authors:  H T Timmers
Journal:  EMBO J       Date:  1994-01-15       Impact factor: 11.598

  10 in total

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