Literature DB >> 7681803

Circularly permuted DNA, RNA and proteins--a review.

T Pan1, O C Uhlenbeck.   

Abstract

Circular permutation represents a form of macromolecular isomerization when the normal termini are covalently linked and new termini introduced by breaking the backbone elsewhere. Here, we describe implications of circular permutation on the folding and function of biologically relevant macromolecules. A method permitting the analysis of the folding of all circularly permuted isomers of RNA is presented that has been successfully applied for a tRNA and the binding site of the coliphage R17 coat protein.

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Year:  1993        PMID： 7681803     DOI： 10.1016/0378-1119(93)90317-v

Source DB:  PubMed          Journal:  Gene        ISSN： 0378-1119            Impact factor:   3.688


  14 in total

1.  Communication between RNA folding domains revealed by folding of circularly permuted ribozymes.

Authors:  Richard A Lease; Tadepalli Adilakshmi; Susan Heilman-Miller; Sarah A Woodson
Journal:  J Mol Biol       Date:  2007-07-12       Impact factor: 5.469

2.  Synthesis of circular RNA in bacteria and yeast using RNA cyclase ribozymes derived from a group I intron of phage T4.

Authors:  E Ford; M Ares
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-12       Impact factor: 11.205

3.  The role of the Src homology domains in morphological transformation by v-src.

Authors:  M Tian; G S Martin
Journal:  Mol Biol Cell       Date:  1997-07       Impact factor: 4.138

4.  An AU-rich sequence element (UUUN[A/U]U) downstream of the edited C in apolipoprotein B mRNA is a high-affinity binding site for Apobec-1: binding of Apobec-1 to this motif in the 3' untranslated region of c-myc increases mRNA stability.

Authors:  S Anant; N O Davidson
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

5.  Monomeric isomers of human interleukin 5 show that 1:1 receptor recruitment is sufficient for function.

Authors:  J Li; R Cook; M L Doyle; P Hensley; D E McNulty; I Chaiken
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

6.  tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter.

Authors:  K C Keiler; L Shapiro; K P Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

Review 7.  Assembly of multifunctional phi29 pRNA nanoparticles for specific delivery of siRNA and other therapeutics to targeted cells.

Authors:  Yi Shu; Mathieu Cinier; Dan Shu; Peixuan Guo
Journal:  Methods       Date:  2011-02-12       Impact factor: 3.608

8.  Square-shaped RNA particles from different RNA folds.

Authors:  Isil Severcan; Cody Geary; Erik Verzemnieks; Arkadiusz Chworos; Luc Jaeger
Journal:  Nano Lett       Date:  2009-03       Impact factor: 11.189

9.  In Vitro and In Vivo Enzyme Activity Screening via RNA-Based Fluorescent Biosensors for S-Adenosyl-l-homocysteine (SAH).

Authors:  Yichi Su; Scott F Hickey; Samantha G L Keyser; Ming C Hammond
Journal:  J Am Chem Soc       Date:  2016-05-27       Impact factor: 15.419

10.  The heterodimeric subunit SRP9/14 of the signal recognition particle functions as permuted single polypeptide chain.

Authors:  F Bovia; N Bui; K Strub
Journal:  Nucleic Acids Res       Date:  1994-06-11       Impact factor: 16.971
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