Literature DB >> 7672588

Transcription termination signals in the nin region of bacteriophage lambda: identification of Rho-dependent termination regions.

S W Cheng1, D L Court, D I Friedman.   

Abstract

The approximately 3-kb nin region of bacteriophage lambda, located between genes P and Q contains transcription termination signals as well as 10 open reading frames. Deletions in the nin region frees phage growth from dependence on the lambda-encoded N-transcription antitermination system, conferring a Nin phenotype (N-independence). A subregion of nin, roc, is defined by a 1.9-kb deletion (delta roc) which partially frees lambda growth from the requirement for N antitermination. The roc region has strong transcription termination activity as assayed by a plasmid-based terminator testing system. We report the following features of the roc region: the biologically significant terminators in the roc region are Rho dependent, deletion analysis located the biologically significant termination signals to a 1.2 kb-segment of roc, and analysis of other deletions and point mutations in the roc region suggested at least two biologically significant regions of termination, tR3 (extending from bp 42020 to 42231) and tR4 (extending from bp 42630 to 42825).

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Year:  1995        PMID: 7672588      PMCID: PMC1206672     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  37 in total

1.  Evidence supporting a tethered tracking model for helicase activity of Escherichia coli Rho factor.

Authors:  E J Steinmetz; T Platt
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-15       Impact factor: 11.205

2.  Screening lambdagt recombinant clones by hybridization to single plaques in situ.

Authors:  W D Benton; R W Davis
Journal:  Science       Date:  1977-04-08       Impact factor: 47.728

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Authors:  D Court; K Sato
Journal:  Virology       Date:  1969-10       Impact factor: 3.616

4.  Rho-dependent termination and concomitant NTPase activity requires a specific, intact RNA region.

Authors:  J A Sharp; T Platt
Journal:  J Biol Chem       Date:  1984-02-25       Impact factor: 5.157

5.  Protein synthesis induced by infection with packaged lambda dv plasmid.

Authors:  E Akaboshi; K Matsubara
Journal:  Plasmid       Date:  1981-11       Impact factor: 3.466

6.  Mutator strains of Escherichia coli, mutD and dnaQ, with defective exonucleolytic editing by DNA polymerase III holoenzyme.

Authors:  H Echols; C Lu; P M Burgers
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

7.  Rex-dependent exclusion of lambdoid phages. II. Determinants of sensitivity to exclusion.

Authors:  P Toothman; I Herskowitz
Journal:  Virology       Date:  1980-04-15       Impact factor: 3.616

8.  Characteristics of lambda p4, a lambda derivative containing 9 per cent excess DNA.

Authors:  J Weil; R Cunningham; R Martin; E Mitchell; B Bolling
Journal:  Virology       Date:  1972-11       Impact factor: 3.616

9.  Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.

Authors:  M D Biggin; T J Gibson; G F Hong
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

10.  A chain of interlinked genes in the ninR region of bacteriophage lambda.

Authors:  M Kröger; G Hobom
Journal:  Gene       Date:  1982-11       Impact factor: 3.688

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  10 in total

1.  Requirement for NusG for transcription antitermination in vivo by the lambda N protein.

Authors:  Ying Zhou; Joshua J Filter; Donald L Court; Max E Gottesman; David I Friedman
Journal:  J Bacteriol       Date:  2002-06       Impact factor: 3.490

2.  NinR- and red-mediated phage-prophage marker rescue recombination in Escherichia coli: recovery of a nonhomologous immlambda DNA segment by infecting lambdaimm434 phages.

Authors:  Sidney Hayes; Kengo Asai; Audrey M Chu; Connie Hayes
Journal:  Genetics       Date:  2005-06-14       Impact factor: 4.562

Review 3.  A new look at bacteriophage lambda genetic networks.

Authors:  Donald L Court; Amos B Oppenheim; Sankar L Adhya
Journal:  J Bacteriol       Date:  2006-11-03       Impact factor: 3.490

4.  Evidence that the promoter can influence assembly of antitermination complexes at downstream RNA sites.

Authors:  Ying Zhou; Ting Shi; Mark A Mozola; Eric R Olson; Karla Henthorn; Susan Brown; Gary N Gussin; David I Friedman
Journal:  J Bacteriol       Date:  2006-03       Impact factor: 3.490

5.  lambda Rap protein is a structure-specific endonuclease involved in phage recombination.

Authors:  G J Sharples; L M Corbett; I R Graham
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

6.  Genome of bacteriophage P1.

Authors:  Małgorzata B Łobocka; Debra J Rose; Guy Plunkett; Marek Rusin; Arkadiusz Samojedny; Hansjörg Lehnherr; Michael B Yarmolinsky; Frederick R Blattner
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

7.  Genomic investigation of lysogen formation and host lysis systems of the Salmonella temperate bacteriophage SPN9CC.

Authors:  Hakdong Shin; Ju-Hoon Lee; Hyunjin Yoon; Dong-Hyun Kang; Sangryeol Ryu
Journal:  Appl Environ Microbiol       Date:  2013-11-01       Impact factor: 4.792

8.  Finding a needle in the virus metagenome haystack--micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire.

Authors:  Jessica Ray; Michael Dondrup; Sejal Modha; Ida Helene Steen; Ruth-Anne Sandaa; Martha Clokie
Journal:  PLoS One       Date:  2012-04-11       Impact factor: 3.240

Review 9.  Metabolic and Redox Signaling of the Nucleoredoxin-Like-1 Gene for the Treatment of Genetic Retinal Diseases.

Authors:  Emmanuelle Clérin; Myriam Marussig; José-Alain Sahel; Thierry Léveillard
Journal:  Int J Mol Sci       Date:  2020-02-27       Impact factor: 5.923

10.  Genome analysis of Salmonella enterica serovar Typhimurium bacteriophage L, indicator for StySA (StyLT2III) restriction-modification system action.

Authors:  Julie Zaworski; Colleen McClung; Cristian Ruse; Peter R Weigele; Roger W Hendrix; Ching-Chung Ko; Robert Edgar; Graham F Hatfull; Sherwood R Casjens; Elisabeth A Raleigh
Journal:  G3 (Bethesda)       Date:  2021-01-18       Impact factor: 3.154

  10 in total

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