Literature DB >> 7672511

Artificial evolution and natural ribozymes.

P K Kumar1, A D Ellington.   

Abstract

In vitro selection techniques have been used to probe the sequence, structure, and function of natural ribozymes such as the viroid hammerheads and group I self-splicing introns. These artificial evolution experiments help to delimit the range of alternative structures and functions that are available to catalytic RNAs, and thus can provide insights into why particular sequences or mechanisms were fixed during the course of natural selection. Further, the wide variety of forms and functions that ribozymes have been found to assume in the laboratory provides inferential support for the hypothesis that much of modern metabolism may have been distantly derived from biochemistry centered on RNA rather than protein catalysts.

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Year:  1995        PMID: 7672511     DOI: 10.1096/fasebj.9.12.7672511

Source DB:  PubMed          Journal:  FASEB J        ISSN: 0892-6638            Impact factor:   5.191


  8 in total

1.  Optimization and optimality of a short ribozyme ligase that joins non-Watson-Crick base pairings.

Authors:  M P Robertson; J R Hesselberth; A D Ellington
Journal:  RNA       Date:  2001-04       Impact factor: 4.942

2.  In vitro selection of an archaeal RNase P RNA mimics natural variation.

Authors:  Daniel Williams; James W Brown
Journal:  Archaea       Date:  2004-10       Impact factor: 3.273

3.  Representation of unique sequences in libraries of randomized nucleic acids.

Authors:  M Tabler; P Benos; M Dörr
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

4.  Stimulation and suppression of PCR-mediated recombination.

Authors:  M S Judo; A B Wedel; C Wilson
Journal:  Nucleic Acids Res       Date:  1998-04-01       Impact factor: 16.971

Review 5.  In vivo versus in vitro screening or selection for catalytic activity in enzymes and abzymes.

Authors:  J Fastrez
Journal:  Mol Biotechnol       Date:  1997-02       Impact factor: 2.695

6.  In vitro selection of hammerhead ribozymes containing a bulged nucleotide in stem II.

Authors:  J B Thomson; S T Sigurdsson; A Zeuch; F Eckstein
Journal:  Nucleic Acids Res       Date:  1996-11-15       Impact factor: 16.971

7.  In vitro selection for altered divalent metal specificity in the RNase P RNA.

Authors:  D N Frank; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-23       Impact factor: 11.205

8.  RiboaptDB: a comprehensive database of ribozymes and aptamers.

Authors:  Venkata Thodima; Mehdi Pirooznia; Youping Deng
Journal:  BMC Bioinformatics       Date:  2006-09-06       Impact factor: 3.169

  8 in total

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