Literature DB >> 7670490

New HLA-DPB1 alleles generated by interallelic gene conversion detected by analysis of sperm.

G Zangenberg1, M M Huang, N Arnheim, H Erlich.   

Abstract

The rate at which allelic diversity at the HLA loci evolves has been the subject of considerable controversy. The patchwork pattern of sequence polymorphism within the second exon of the HLA class II loci, particularly in the DPB1 locus, may have been generated by segmental exchange (gene conversion). We have analysed the frequency of variant DPB1 sequences that have been created by interallelic gene conversion in the germline by screening pools of sperm using PCR amplification and oligonucleotide probe typing. Our results indicate that about 1/10,000 sperm represents a new DPB1 sequence generated by short tracts of segmental exchange (gene conversion) within the second exon, suggesting that interallelic gene conversion may have an important role in generating the extensive allelic diversity at the HLA loci.

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Year:  1995        PMID: 7670490     DOI: 10.1038/ng0895-407

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  38 in total

1.  Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels.

Authors:  L Frisse; R R Hudson; A Bartoszewicz; J D Wall; J Donfack; A Di Rienzo
Journal:  Am J Hum Genet       Date:  2001-08-29       Impact factor: 11.025

2.  Randomly distributed crossovers may generate block-like patterns of linkage disequilibrium: an act of genetic drift.

Authors:  Kun Zhang; Joshua M Akey; Ning Wang; Momiao Xiong; Ranajit Chakraborty; Li Jin
Journal:  Hum Genet       Date:  2003-04-03       Impact factor: 4.132

3.  Sequence variation and haplotype structure at the human HFE locus.

Authors:  Christopher Toomajian; Martin Kreitman
Journal:  Genetics       Date:  2002-08       Impact factor: 4.562

4.  Dynamics of a human interparalog gene conversion hotspot.

Authors:  Elena Bosch; Matthew E Hurles; Arcadi Navarro; Mark A Jobling
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

5.  Estimating the rate of gene conversion on human chromosome 21.

Authors:  Badri Padhukasahasram; Paul Marjoram; Magnus Nordborg
Journal:  Am J Hum Genet       Date:  2004-07-12       Impact factor: 11.025

6.  Estimating recombination rates using three-site likelihoods.

Authors:  Jeffrey D Wall
Journal:  Genetics       Date:  2004-07       Impact factor: 4.562

7.  Recombination-associated sequence homogenization of neighboring Alu elements: signature of nonallelic gene conversion.

Authors:  Alexey Aleshin; Degui Zhi
Journal:  Mol Biol Evol       Date:  2010-05-07       Impact factor: 16.240

Review 8.  Concerted and birth-and-death evolution of multigene families.

Authors:  Masatoshi Nei; Alejandro P Rooney
Journal:  Annu Rev Genet       Date:  2005       Impact factor: 16.830

9.  An alternative promoter in the mouse major histocompatibility complex class II I-Abeta gene: implications for the origin of CpG islands.

Authors:  D Macleod; R R Ali; A Bird
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

10.  Mutational mechanisms, phylogeny, and evolution of a repetitive region within a clock gene of Drosophila melanogaster.

Authors:  E Rosato; A A Peixoto; A Gallippi; C P Kyriacou; R Costa
Journal:  J Mol Evol       Date:  1996-04       Impact factor: 2.395

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