Literature DB >> 7665529

The distance between Escherichia coli genes is related to gene expression levels.

A Eyre-Walker1.   

Abstract

It is shown that the distance between Escherichia coli genes oriented in the same direction on the chromosome is positively correlated to the expression level of the downstream gene. It is suggested that this could be a strategy to avoid interference between ribosomes translating two different genes.

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Year:  1995        PMID： 7665529      PMCID： PMC177336          DOI： 10.1128/jb.177.18.5368-5369.1995

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  5 in total

1.  The selection-mutation-drift theory of synonymous codon usage.

Authors:  M Bulmer
Journal:  Genetics       Date:  1991-11       Impact factor: 4.562

2.  The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors:  P M Sharp; W H Li
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

3.  Codon usage in bacteria: correlation with gene expressivity.

Authors:  M Gouy; C Gautier
Journal:  Nucleic Acids Res       Date:  1982-11-25       Impact factor: 16.971

4.  Reduced synonymous substitution rate at the start of enterobacterial genes.

Authors:  A Eyre-Walker; M Bulmer
Journal:  Nucleic Acids Res       Date:  1993-09-25       Impact factor: 16.971

5.  Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes.

Authors:  F R Blattner; V Burland; G Plunkett; H J Sofia; D L Daniels
Journal:  Nucleic Acids Res       Date:  1993-11-25       Impact factor: 16.971
  5 in total
  9 in total

1.  Topological analysis of the membrane-bound glucosyltransferase, MdoH, required for osmoregulated periplasmic glucan synthesis in Escherichia coli.

Authors:  L Debarbieux; A Bohin; J P Bohin
Journal:  J Bacteriol       Date:  1997-11       Impact factor: 3.490

2.  The close proximity of Escherichia coli genes: consequences for stop codon and synonymous codon use.

Authors:  A Eyre-Walker
Journal:  J Mol Evol       Date:  1996-02       Impact factor: 2.395

3.  Conditions for the evolution of gene clusters in bacterial genomes.

Authors:  Sara Ballouz; Andrew R Francis; Ruiting Lan; Mark M Tanaka
Journal:  PLoS Comput Biol       Date:  2010-02-12       Impact factor: 4.475

Review 4.  Posttranscriptional control of gene expression in yeast.

Authors:  J E McCarthy
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

5.  Genomic identification and in vitro reconstitution of a complete biosynthetic pathway for the osmolyte di-myo-inositol-phosphate.

Authors:  Dmitry A Rodionov; Oleg V Kurnasov; Boguslaw Stec; Yan Wang; Mary F Roberts; Andrei L Osterman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-02       Impact factor: 11.205

6.  Escherichia coli thymidylate kinase: molecular cloning, nucleotide sequence, and genetic organization of the corresponding tmk locus.

Authors:  J P Reynes; M Tiraby; M Baron; D Drocourt; G Tiraby
Journal:  J Bacteriol       Date:  1996-05       Impact factor: 3.490

7.  The life-cycle of operons.

Authors:  Morgan N Price; Adam P Arkin; Eric J Alm
Journal:  PLoS Genet       Date:  2006-06-23       Impact factor: 5.917

8.  The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana.

Authors:  Dirk Walther; Roman Brunnemann; Joachim Selbig
Journal:  PLoS Genet       Date:  2006-12-06       Impact factor: 5.917

9.  Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?

Authors:  Albert Pallejà; Eoghan D Harrington; Peer Bork
Journal:  BMC Genomics       Date:  2008-07-15       Impact factor: 3.969
  9 in total

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