Literature DB >> 7656014

The NMR structure of the inhibited catalytic domain of human stromelysin-1.

P R Gooley1, J F O'Connell, A I Marcy, G C Cuca, S P Salowe, B L Bush, J D Hermes, C K Esser, W K Hagmann, J P Springer.   

Abstract

The three-dimensional structure of the catalytic domain of stromelysin-1 complexed with an N-carboxyl alkyl inhibitor has been determined by NMR methods. The global fold consists of three helices, a five stranded beta-sheet and a methionine located in a turn near the catalytic histidines, classifying stromelysin-1 as a metzincin. Stromelysin-1 is unique in having two independent zinc binding sites: a catalytic site and a structural site. The inhibitor binds in an extended conformation. The S1' subsite is a deep hydrophobic pocket, whereas S2' appears shallow and S3' open.

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Year:  1994        PMID: 7656014     DOI: 10.1038/nsb0294-111

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  16 in total

1.  Dynamics of stromelysin/inhibitor interactions studied by 15N NMR relaxation measurements: comparison of ligand binding to the S1-S3 and S'1-S'3 subsites.

Authors:  P Yuan; V P Marshall; G L Petzold; R A Poorman; B J Stockman
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

Review 2.  Structural basis of matrix metalloproteinases and tissue inhibitors of metalloproteinases.

Authors:  Klaus Maskos; Wolfram Bode
Journal:  Mol Biotechnol       Date:  2003-11       Impact factor: 2.695

3.  Conformational variability of matrix metalloproteinases: beyond a single 3D structure.

Authors:  Ivano Bertini; Vito Calderone; Marta Cosenza; Marco Fragai; Yong-Min Lee; Claudio Luchinat; Stefano Mangani; Beatrice Terni; Paola Turano
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

4.  Computational sequence analysis of matrix metalloproteinases.

Authors:  Q A Sang; D A Douglas
Journal:  J Protein Chem       Date:  1996-02

5.  Comparison of the structure of human recombinant short form stromelysin by multidimensional heteronuclear NMR and X-ray crystallography.

Authors:  P R Gooley; J F O'Connell; A I Marcy; G C Cuca; M G Axel; C G Caldwell; W K Hagmann; J W Becker
Journal:  J Biomol NMR       Date:  1996-01       Impact factor: 2.835

6.  Structural insight into the complex formation of latent matrix metalloproteinase 2 with tissue inhibitor of metalloproteinase 2.

Authors:  Ekaterina Morgunova; Ari Tuuttila; Ulrich Bergmann; Karl Tryggvason
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

7.  Bioactive conformation of stromelysin inhibitors determined by transferred nuclear Overhauser effects.

Authors:  N C Gonnella; R Bohacek; X Zhang; I Kolossváry; C G Paris; R Melton; C Winter; S I Hu; V Ganu
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-17       Impact factor: 11.205

8.  Protein phi and psi dihedral restraints determined from multidimensional hypersurface correlations of backbone chemical shifts and their use in the determination of protein tertiary structures.

Authors:  R D Beger; P H Bolton
Journal:  J Biomol NMR       Date:  1997-09       Impact factor: 2.835

9.  Analysis of zinc binding sites in protein crystal structures.

Authors:  I L Alberts; K Nadassy; S J Wodak
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

10.  Matrix metalloproteinase (MMP)-3 polymorphism in patients with HBV related chronic liver disease.

Authors:  Hyun Phil Shin; Joung Il Lee; Joo-Ho Jung; Sung-Vin Yim; Hyun Jeong Kim; Jae Myung Cha; Jong Beom Park; Kwang Ro Joo; Jae Seok Hwang; Byoung-Kuk Jang
Journal:  Dig Dis Sci       Date:  2007-09-01       Impact factor: 3.199

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