Literature DB >> 7647794

Comparative sequence analysis of the human and pufferfish Huntington's disease genes.

S Baxendale1, S Abdulla, G Elgar, D Buck, M Berks, G Micklem, R Durbin, G Bates, S Brenner, S Beck.   

Abstract

The Huntington's disease (HD) gene encodes a novel protein with as yet no known function. In order to identify the functionally important domains of this protein, we have cloned and sequenced the homologue of the HD gene in the pufferfish, Fugu rubripes. The Fugu HD gene spans only 23 kb of genomic DNA, compared to the 170 kb human gene, and yet all 67 exons are conserved. The first coding exon, the site of the disease-causing triplet repeat, is highly conserved. However, the glutamine repeat in Fugu consists of just four residues. We also show that gene order may be conserved over longer stretches of the two genomes. Our work describes a detailed example of sequence comparison between human and Fugu, and illustrates the power of the pufferfish genome as a model system in the analysis of human genes.

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Year:  1995        PMID: 7647794     DOI: 10.1038/ng0595-67

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  35 in total

1.  Analysis of 148 kb of genomic DNA around the wnt1 locus of Fugu rubripes.

Authors:  K Gellner; S Brenner
Journal:  Genome Res       Date:  1999-03       Impact factor: 9.043

2.  Mapping of complex regulatory elements by pufferfish/zebrafish transgenesis.

Authors:  E V Rothenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

3.  Genomic sequence analysis of Fugu rubripes CFTR and flanking genes in a 60 kb region conserving synteny with 800 kb of human chromosome 7.

Authors:  H Davidson; M S Taylor; A Doherty; A C Boyd; D J Porteous
Journal:  Genome Res       Date:  2000-08       Impact factor: 9.043

Review 4.  Growth hormone secretagogue receptor family members and ligands.

Authors:  R G Smith; R Leonard; A R Bailey; O Palyha; S Feighner; C Tan; K K Mckee; S S Pong; P Griffin; A Howard
Journal:  Endocrine       Date:  2001-02       Impact factor: 3.633

5.  Intron-exon structures of eukaryotic model organisms.

Authors:  M Deutsch; M Long
Journal:  Nucleic Acids Res       Date:  1999-08-01       Impact factor: 16.971

6.  Pufferfish and new paradigm for comparative genome analysis.

Authors:  B F Koop; J H Nadeau
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

7.  The conserved role of Krox-20 in directing Hox gene expression during vertebrate hindbrain segmentation.

Authors:  S Nonchev; M Maconochie; C Vesque; S Aparicio; L Ariza-McNaughton; M Manzanares; K Maruthainar; A Kuroiwa; S Brenner; P Charnay; R Krumlauf
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

8.  A functional role for some Fugu introns larger than the typical short ones: the example of the gene coding for ribosomal protein S7 and snoRNA U17.

Authors:  F Cecconi; C Crosio; P Mariottini; G Cesareni; M Giorgi; S Brenner; F Amaldi
Journal:  Nucleic Acids Res       Date:  1996-08-15       Impact factor: 16.971

9.  Crystal structure of a dimeric chymotrypsin inhibitor 2 mutant containing an inserted glutamine repeat.

Authors:  Y W Chen; K Stott; M F Perutz
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-16       Impact factor: 11.205

10.  Conservation of synteny between the genome of the pufferfish (Fugu rubripes) and the region on human chromosome 14 (14q24.3) associated with familial Alzheimer disease (AD3 locus)

Authors:  M K Trower; S M Orton; I J Purvis; P Sanseau; J Riley; C Christodoulou; D Burt; C G See; G Elgar; R Sherrington; E I Rogaev; P St George-Hyslop; S Brenner; C W Dykes
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

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