Literature DB >> 7632600

Population study of 3 STR loci in the Basque Country (northern Spain).

S Alonso1, A Castro, I Fernandez, M Gómez de Cedrón, A Garcia-Orad, E Meyer, M Martínez de Pancorbo.   

Abstract

The tetrameric STRs, HUMTH01, HUMVWA31A and HUMFES/FPS, were studied in a population from the Basque Country (northern Spain) for their frequency distribution and applicability to identity and paternity testing. All systems conformed to Hardy-Weinberg equilibrium; pairwise comparisons demonstrated the allelic independence between loci, and furthermore, all systems seemed to be in agreement with expectations from the Stepwise Mutation Model (SMM) of the mutation-drift theory, which indicates the homogeneity of the population and suggests a replication slippage mechanism as a possible model for generating alleles. A comparison with other population groups appeared to indicate that frequencies are well conserved in Caucasians, but differ from other racial groups. The calculated parameters "a priori probability of exclusion" (PEX) and "index of discrimination" (ID), show the informativeness of these loci for the determination of identity and relatedness of individuals.

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Year:  1995        PMID: 7632600     DOI: 10.1007/bf01245481

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  27 in total

1.  Analysis of the VNTR locus D1S80 by the PCR followed by high-resolution PAGE.

Authors:  B Budowle; R Chakraborty; A M Giusti; A J Eisenberg; R C Allen
Journal:  Am J Hum Genet       Date:  1991-01       Impact factor: 11.025

2.  Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups.

Authors:  A Edwards; H A Hammond; L Jin; C T Caskey; R Chakraborty
Journal:  Genomics       Date:  1992-02       Impact factor: 5.736

3.  The distribution of the HLA-DQ alpha alleles and genotypes in the Finnish population as determined by the use of DNA amplification and allele specific oligonucleotides.

Authors:  A Sajantila; M Ström; B Budowle; P J Tienari; C Ehnholm; L Peltonen
Journal:  Int J Legal Med       Date:  1991       Impact factor: 2.686

4.  Population data and forensic efficiency values for the STR systems HumVWA, HumMBP and HumFABP.

Authors:  A Möller; P Wiegand; C Grüschow; S A Seuchter; M P Baur; B Brinkmann
Journal:  Int J Legal Med       Date:  1994       Impact factor: 2.686

5.  Characterization of eight VNTR loci by agarose gel electrophoresis.

Authors:  S J Odelberg; R Plaetke; J R Eldridge; L Ballard; P O'Connell; Y Nakamura; M Leppert; J M Lalouel; R White
Journal:  Genomics       Date:  1989-11       Impact factor: 5.736

6.  Evolutionary transience of hypervariable minisatellites in man and the primates.

Authors:  I C Gray; A J Jeffreys
Journal:  Proc Biol Sci       Date:  1991-03-22       Impact factor: 5.349

7.  Automated DNA profiling employing multiplex amplification of short tandem repeat loci.

Authors:  C P Kimpton; P Gill; A Walton; A Urquhart; E S Millican; M Adams
Journal:  PCR Methods Appl       Date:  1993-08

8.  Forensic validation of the STR systems SE 33 and TC 11.

Authors:  P Wiegand; B Budowle; S Rand; B Brinkmann
Journal:  Int J Legal Med       Date:  1993       Impact factor: 2.686

9.  Evaluation of 13 short tandem repeat loci for use in personal identification applications.

Authors:  H A Hammond; L Jin; Y Zhong; C T Caskey; R Chakraborty
Journal:  Am J Hum Genet       Date:  1994-07       Impact factor: 11.025

10.  Identification of repeat sequence heterogeneity at the polymorphic short tandem repeat locus HUMTH01[AATG]n and reassignment of alleles in population analysis by using a locus-specific allelic ladder.

Authors:  C Puers; H A Hammond; L Jin; C T Caskey; J W Schumm
Journal:  Am J Hum Genet       Date:  1993-10       Impact factor: 11.025

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  5 in total

1.  Short alleles revealed by PCR demonstrate no heterozygote deficiency at minisatellite loci D1S7, D7S21, and D12S11.

Authors:  S Alonso; A Castro; I Fernández-Fernández; M M de Pancorbo
Journal:  Am J Hum Genet       Date:  1997-02       Impact factor: 11.025

2.  Frequencies for five short tandem repeat (STR) systems in a population from north Poland.

Authors:  R Pawlowski; A Maciejewska; R Paszkowska; A Welz
Journal:  Int J Legal Med       Date:  1997       Impact factor: 2.686

3.  Ancestral origins of the prion protein gene D178N mutation in the Basque Country.

Authors:  Ana B Rodríguez-Martínez; Christian Barreau; Isabelle Coupry; Jordi Yagüe; Raquel Sánchez-Valle; Luis Galdós-Alcelay; Agustín Ibáñez; Antón Digón; Ignacio Fernández-Manchola; Cyril Goizet; Azucena Castro; Nerea Cuevas; Maite Alvarez-Alvarez; Marian M de Pancorbo; Benoît Arveiler; Juan J Zarranz
Journal:  Hum Genet       Date:  2005-04-02       Impact factor: 4.132

4.  HLA-DQA1 in autochthonous Basques: description of a genocline for the DQA1*0201 allele in Europe.

Authors:  M Iriondo; C Manzano; C de la Rúa
Journal:  Int J Legal Med       Date:  1996       Impact factor: 2.686

5.  Autosomal short tandem repeat genetic variation of the Basques in Spain.

Authors:  Kristin L Young; Guangyun Sun; Ranjan Deka; Michael H Crawford
Journal:  Croat Med J       Date:  2011-06       Impact factor: 1.351

  5 in total

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