Literature DB >> 7579648

The emerging role of insertions and deletions in protein engineering.

D Shortle1, J Sondek.   

Abstract

Most attempts to engineer the properties of proteins have employed single or multiple substitution mutations, which typically produce minor changes in structure. Recent structural and stability studies of insertion and deletion mutants clearly indicate that relatively large structural perturbations can be induced by altering the spacing of residues along the polypeptide backbone, often without major losses in protein stability. Although their effects are difficult to anticipate, insertions and deletions provide important new tools for altering protein structures in directions not achievable with substitutions alone.

Mesh:

Year:  1995        PMID: 7579648     DOI: 10.1016/0958-1669(95)80067-0

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  17 in total

1.  NMR structure of the noncytotoxic alpha-sarcin mutant Delta(7-22): the importance of the native conformation of peripheral loops for activity.

Authors:  Ma Flor García-Mayoral; Lucia García-Ortega; Ma Pilar Lillo; Jorge Santoro; Alvaro Martínez del Pozo; José G Gavilanes; Manuel Rico; Marta Bruix
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

2.  Protein evolution by codon-based random deletions.

Authors:  Joel Osuna; Jorge Yáñez; Xavier Soberón; Paul Gaytán
Journal:  Nucleic Acids Res       Date:  2004-09-30       Impact factor: 16.971

3.  Consolidating critical binding determinants by noncyclic rearrangement of protein secondary structure.

Authors:  Ramon K Tabtiang; Brent O Cezairliyan; Robert A Grant; Jesse C Cochrane; Robert T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-02       Impact factor: 11.205

4.  Predicting the magnitude of the reflex response to insertions in ubiquitin.

Authors:  Debra M Ferraro; Andrew D Robertson
Journal:  J Mol Biol       Date:  2007-11-01       Impact factor: 5.469

5.  High-resolution functional mapping of a cloned gene by genetic footprinting.

Authors:  I R Singh; R A Crowley; P O Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-18       Impact factor: 11.205

6.  Mutagenesis of histidine 26 demonstrates the importance of loop-loop and loop-protein interactions for the function of iso-1-cytochrome c.

Authors:  J S Fetrow; U Dreher; D J Wiland; D L Schaak; T L Boose
Journal:  Protein Sci       Date:  1998-04       Impact factor: 6.725

7.  Fitness Effects of Single Amino Acid Insertions and Deletions in TEM-1 β-Lactamase.

Authors:  Courtney E Gonzalez; Paul Roberts; Marc Ostermeier
Journal:  J Mol Biol       Date:  2019-04-26       Impact factor: 5.469

8.  Computed structures of point deletion mutants and their enzymatic activities.

Authors:  Monica Berrondo; Jeffrey J Gray
Journal:  Proteins       Date:  2011-08-23

9.  A role for indels in the evolution of Cro protein folds.

Authors:  Katie L Stewart; Michael R Nelson; Karen V Eaton; William J Anderson; Matthew H J Cordes
Journal:  Proteins       Date:  2013-08-23

10.  Leucine to proline substitution by SNP at position 197 in Caspase-9 gene expression leads to neuroblastoma: a bioinformatics analysis.

Authors:  Arpita Kundu; Susmita Bag; Sudha Ramaiah; Anand Anbarasu
Journal:  3 Biotech       Date:  2012-09-18       Impact factor: 2.406

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