Literature DB >> 7565751

3'-end-forming signals of yeast mRNA.

Z Guo1, F Sherman.   

Abstract

It was previously shown that three distinct but interdependent elements are required for 3' end formation of mRNA in the yeast Saccharomyces cerevisiae: (i) the efficiency element TATATA and related sequences, which function by enhancing the efficiency of positioning elements; (ii) positioning elements, such as TTAAGAAC and AAGAA, which position the poly(A) site; and (iii) the actual site of polyadenylation. In this study, we have shown that several A-rich sequences, including the vertebrate poly(A) signal AATAAA, are also positioning elements. Saturated mutagenesis revealed that optimum sequences of the positioning element were AATAAA and AAAAAA and that this element can tolerate various extents of replacements. However, the GATAAA sequence was completely ineffective. The major cleavage sites determined in vitro corresponded to the major poly(A) sites observed in vivo. Our findings support the assumption that some components of the basic polyadenylation machinery could have been conserved among yeasts, plants, and mammals, although 3' end formation in yeasts is clearly distinct from that of higher eukaryotes.

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Year:  1995        PMID: 7565751      PMCID: PMC230850          DOI: 10.1128/MCB.15.11.5983

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  42 in total

1.  Sequences regulating temporal poly(A) site switching in the adenovirus major late transcription unit.

Authors:  J D DeZazzo; E Falck-Pedersen; M J Imperiale
Journal:  Mol Cell Biol       Date:  1991-12       Impact factor: 4.272

2.  Some of the signals for 3'-end formation in transcription of the Saccharomyces cerevisiae Ty-D15 element are immediately downstream of the initiation site.

Authors:  K Yu; R T Elder
Journal:  Mol Cell Biol       Date:  1989-06       Impact factor: 4.272

3.  Transcription by RNA polymerase II induces changes of DNA topology in yeast.

Authors:  B I Osborne; L Guarente
Journal:  Genes Dev       Date:  1988-06       Impact factor: 11.361

4.  Rapid and efficient site-specific mutagenesis without phenotypic selection.

Authors:  T A Kunkel; J D Roberts; R A Zakour
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

5.  Transcription terminates in yeast distal to a control sequence.

Authors:  S Henikoff; J D Kelly; E H Cohen
Journal:  Cell       Date:  1983-06       Impact factor: 41.582

6.  Polymerase chain reaction mapping of yeast GAL7 mRNA polyadenylation sites demonstrates that 3' end processing in vitro faithfully reproduces the 3' ends observed in vivo.

Authors:  P P Sadhale; R Sapolsky; R W Davis; J S Butler; T Platt
Journal:  Nucleic Acids Res       Date:  1991-07-11       Impact factor: 16.971

7.  RNA processing generates the mature 3' end of yeast CYC1 messenger RNA in vitro.

Authors:  J S Butler; T Platt
Journal:  Science       Date:  1988-12-02       Impact factor: 47.728

8.  Sequences responsible for transcription termination on a gene segment in Saccharomyces cerevisiae.

Authors:  S Henikoff; E H Cohen
Journal:  Mol Cell Biol       Date:  1984-08       Impact factor: 4.272

9.  DNA sequence required for efficient transcription termination in yeast.

Authors:  K S Zaret; F Sherman
Journal:  Cell       Date:  1982-03       Impact factor: 41.582

10.  Mutational analysis of a yeast transcriptional terminator.

Authors:  B I Osborne; L Guarente
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

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  44 in total

1.  In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species.

Authors:  J H Graber; C R Cantor; S C Mohr; T F Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  The two Saccharomyces cerevisiae SUA7 (TFIIB) transcripts differ at the 3'-end and respond differently to stress.

Authors:  B C Hoopes; G D Bowers; M J DiVisconte
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

3.  Distinct roles of two Yth1p domains in 3'-end cleavage and polyadenylation of yeast pre-mRNAs.

Authors:  S M Barabino; M Ohnacker; W Keller
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

Review 4.  Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis.

Authors:  J Zhao; L Hyman; C Moore
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

5.  Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize.

Authors:  Xiangqin Cui; An-Ping Hsia; Feng Liu; Daniel A Ashlock; Roger P Wise; Patrick S Schnable
Journal:  Genetics       Date:  2003-02       Impact factor: 4.562

6.  The Schizosaccharomyces pombe pla1 gene encodes a poly(A) polymerase and can functionally replace its Saccharomyces cerevisiae homologue.

Authors:  M Ohnacker; L Minvielle-Sebastia; W Keller
Journal:  Nucleic Acids Res       Date:  1996-07-01       Impact factor: 16.971

7.  Grabbing the message: structural basis of mRNA 3'UTR recognition by Hrp1.

Authors:  José Manuel Pérez-Cañadillas
Journal:  EMBO J       Date:  2006-06-22       Impact factor: 11.598

8.  Yeast nuclear RNA processing.

Authors:  Jade Bernstein; Eric A Toth
Journal:  World J Biol Chem       Date:  2012-01-26

9.  Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability.

Authors:  Radharani Duttagupta; Bin Tian; Carol J Wilusz; Danny T Khounh; Patricia Soteropoulos; Ming Ouyang; Joseph P Dougherty; Stuart W Peltz
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

10.  Signals sufficient for 3'-end formation of yeast mRNA.

Authors:  Z Guo; F Sherman
Journal:  Mol Cell Biol       Date:  1996-06       Impact factor: 4.272

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