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Literature DB >> 7563140

Phylogeny reconstruction for protein sequences based on amino acid properties.

Abstract

This paper presents an essentially new method used to construct phylogenetic trees from related amino acid sequences. The method is based on a new distance measure which describes sequence relationships by means of typical steric and physicochemical properties of the amino acids and is advantageous in some essential points. The method was applied to different sets of protein sequences and the results were compared with other well-established methods.

Mesh：

Substances：

Year: 1995 PMID： 7563140 DOI： 10.1007/BF00160324

Source DB: PubMed Journal: J Mol Evol ISSN： 0022-2844 Impact factor: 2.395

11 in total

1. Recovering evolutionary trees under a more realistic model of sequence evolution.

Authors: P J Lockhart; M A Steel; M D Hendy; D Penny
Journal: Mol Biol Evol Date: 1994-07 Impact factor: 16.240

2. Recognition of different nucleotide-binding sites in primary structures using a property-pattern approach.

Authors: P Bork; C Grunwald
Journal: Eur J Biochem Date: 1990-07-31

3. Identification of protein sequence homology by consensus template alignment.

Authors: W R Taylor
Journal: J Mol Biol Date: 1986-03-20 Impact factor: 5.469

4. Prediction of protein secondary structure and active sites using the alignment of homologous sequences.

Authors: M J Zvelebil; G J Barton; W R Taylor; M J Sternberg
Journal: J Mol Biol Date: 1987-06-20 Impact factor: 5.469

5. An iterative approach from the standpoint of the additive hypothesis to the dendrogram problem posed by molecular data sets.

Authors: G W Moore; M Goodman; J Barnabas
Journal: J Theor Biol Date: 1973-03 Impact factor: 2.691

Review 6. Construction of phylogenetic trees.

Authors: W M Fitch; E Margoliash
Journal: Science Date: 1967-01-20 Impact factor: 47.728

Phylogeny reconstruction for protein sequences based on amino acid properties.

1. Recovering evolutionary trees under a more realistic model of sequence evolution.

2. Recognition of different nucleotide-binding sites in primary structures using a property-pattern approach.

3. Identification of protein sequence homology by consensus template alignment.

4. Prediction of protein secondary structure and active sites using the alignment of homologous sequences.

5. An iterative approach from the standpoint of the additive hypothesis to the dendrogram problem posed by molecular data sets.

Review 6. Construction of phylogenetic trees.

7. Estimating the reliability of evolutionary trees.

8. Progressive sequence alignment as a prerequisite to correct phylogenetic trees.

9. A practical method for calculating evolutionary trees from sequence data.

10. A strategy for sequence phylogeny research.

1. Evolutionary classification of homeodomains.

2. Codon usage patterns across seven Rosales species.