Literature DB >> 7563128

A Drosophila hsp70 gene contains long, antiparallel, coupled open reading frames (LAC ORFs) conserved in homologous loci.

I Konstantopoulou1, C A Ouzounis, E Drosopoulou, M Yiangou, P Sideras, C Sander, Z G Scouras.   

Abstract

A clone isolated from a Drosophila auraria heat-shock cDNA library presents two long, antiparallel, coupled (LAC) open reading frames (ORFs). One strand ORF is 1,929 nucleotides long and exhibits great identity (87.5% at the nucleotide level and 94% at the amino acid level) with the hsp70 gene copies of D. melanogaster, while the second strand ORF, in antiparallel in-frame register arrangement, is 1,839 nucleotides long and exhibits 32% identity with a putative, recently identified, NAD(+)-dependent glutamate dehydrogenase (NAD(+)-GDH). The overlap of the two ORFs is 1,824 nucleotides long. Computational analysis shows that this LAC ORF arrangement is conserved in other hsp70 loci in a wide range of organisms, raising questions about possible evolutionary benefits of such a peculiar genomic organization.

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Year:  1995        PMID: 7563128     DOI: 10.1007/BF00160312

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  29 in total

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Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

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Authors:  S Henikoff; M A Keene; K Fechtel; J W Fristrom
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4.  Molecular and developmental characterization of the heat shock cognate 4 gene of Drosophila melanogaster.

Authors:  L A Perkins; J S Doctor; K Zhang; L Stinson; N Perrimon; E A Craig
Journal:  Mol Cell Biol       Date:  1990-06       Impact factor: 4.272

Review 5.  The heat-shock proteins.

Authors:  S Lindquist; E A Craig
Journal:  Annu Rev Genet       Date:  1988       Impact factor: 16.830

6.  Antisense overlapping open reading frames in genes from bacteria to humans.

Authors:  E Merino; P Balbás; J L Puente; F Bolívar
Journal:  Nucleic Acids Res       Date:  1994-05-25       Impact factor: 16.971

7.  Genomic sequencing.

Authors:  G M Church; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

8.  Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose.

Authors:  H Aviv; P Leder
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

9.  Sequencing of chromosome I of Saccharomyces cerevisiae: analysis of the 42 kbp SPO7-CENI-CDC15 region.

Authors:  M W Clark; T Keng; R K Storms; W Zhong; N Fortin; B Zeng; S Delaney; B F Ouellette; A B Barton; D B Kaback
Journal:  Yeast       Date:  1994-04       Impact factor: 3.239

10.  Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.

Authors:  P Bork; C Ouzounis; C Sander; M Scharf; R Schneider; E Sonnhammer
Journal:  Protein Sci       Date:  1992-12       Impact factor: 6.725

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  6 in total

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Authors:  William L Duax; Robert Huether; Vladimir Z Pletnev; David Langs; Anthony Addlagatta; Sonjay Connare; Lukas Habegger; Jay Gill
Journal:  Proteins       Date:  2005-12-01

2.  The heat shock genes in the Drosophila montium subgroup: chromosomal localization and evolutionary implications.

Authors:  E Drosopoulou; I Konstantopoulou; Z G Scouras
Journal:  Chromosoma       Date:  1996-08       Impact factor: 4.316

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Journal:  Mol Genet Genomics       Date:  2019-07-25       Impact factor: 3.291

4.  Detection of functional overlapping genes: simulation and case studies.

Authors:  Niv Sabath; Dan Graur
Journal:  J Mol Evol       Date:  2010-09-04       Impact factor: 2.395

5.  Open reading frames provide a rich pool of potential natural antisense transcripts in fungal genomes.

Authors:  Stephan Steigele; Kay Nieselt
Journal:  Nucleic Acids Res       Date:  2005-09-07       Impact factor: 16.971

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Journal:  Heliyon       Date:  2017-12-28
  6 in total

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